SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_M13
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   159   2e-39
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   159   2e-39
11_01_0710 - 5830475-5830595,5831498-5834124                           29   5.4  
08_01_0332 + 2971361-2971439,2971596-2971783,2971985-2972062,297...    28   7.2  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  159 bits (386), Expect = 2e-39
 Identities = 81/151 (53%), Positives = 99/151 (65%), Gaps = 1/151 (0%)
 Frame = -3

Query: 767 HTQMXXVKQXX-KKXHIXXIXXNXGTXEDKVRWAREHXEKPIPVDSVFAQDEMXDCIXXX 591
           HTQ+  +K    KK H+  I  N GT  DKV +  +  EK IPVD+VF +DEM D I   
Sbjct: 165 HTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVT 224

Query: 590 XXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 411
                    +RW   +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKK 284

Query: 410 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSI 318
           +Y+IG     K G+   + A TE+D +EK I
Sbjct: 285 VYKIG-----KSGQE-SHAACTEFDRTEKDI 309



 Score = 86.2 bits (204), Expect = 3e-17
 Identities = 38/52 (73%), Positives = 44/52 (84%)
 Frame = -2

Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADK 139
           KGCC+GPKKR++TLR+SL   T R ALE+I LKFIDTSSKFGHGRFQT  +K
Sbjct: 329 KGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  159 bits (386), Expect = 2e-39
 Identities = 81/151 (53%), Positives = 99/151 (65%), Gaps = 1/151 (0%)
 Frame = -3

Query: 767 HTQMXXVKQXX-KKXHIXXIXXNXGTXEDKVRWAREHXEKPIPVDSVFAQDEMXDCIXXX 591
           HTQ+  +K    KK H+  I  N GT  DKV +  +  EK IPVD+VF +DEM D I   
Sbjct: 165 HTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVT 224

Query: 590 XXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 411
                    +RW   +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKK 284

Query: 410 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSI 318
           +Y+IG     K G+   + A TE+D +EK I
Sbjct: 285 VYKIG-----KSGQE-SHAACTEFDRTEKDI 309



 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 42/60 (70%), Positives = 48/60 (80%)
 Frame = -2

Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
           KGCC+GPKKR++TLR+SL   T R ALE+I LKFIDTSSKFGHGRFQT  +K  F G LK
Sbjct: 329 KGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388


>11_01_0710 - 5830475-5830595,5831498-5834124
          Length = 915

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 604 QSIISSWANTESTGIGFSXCSLAHLTL 684
           +S+ISSW  +  TG   S CS+ +L +
Sbjct: 650 ESVISSWGGSVHTGTSSSSCSVTNLVV 676


>08_01_0332 +
           2971361-2971439,2971596-2971783,2971985-2972062,
           2972354-2972425,2972513-2972631,2972858-2972942,
           2973096-2973185,2973268-2973369,2973448-2973624,
           2973874-2973954,2974511-2974582,2974662-2974756,
           2974831-2974919,2975016-2975078,2975161-2975204,
           2975554-2975685
          Length = 521

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 1   FFFFFFALSNVYFHGLHLRL 60
           FFFFFF  +N+ FH L+  L
Sbjct: 307 FFFFFFFCANILFHHLNYLL 326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,762,697
Number of Sequences: 37544
Number of extensions: 367049
Number of successful extensions: 911
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -