Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_M13
         (778 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               210   7e-55
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         108   6e-24
SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)               90   2e-18
SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)                   29   3.2  
SB_37999| Best HMM Match : RVT_1 (HMM E-Value=7.5e-10)                 29   4.2  
SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.5  
SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)                   28   7.3  
SB_20506| Best HMM Match : Lig_chan (HMM E-Value=2.7)                  28   7.3  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  210 bits (514), Expect = 7e-55
 Identities = 102/151 (67%), Positives = 110/151 (72%), Gaps = 1/151 (0%)
 Frame = -3

Query: 767 HTQMXXVKQXXKKXHIXXIXXNXGTX-EDKVRWAREHXEKPIPVDSVFAQDEMXDCIXXX 591
           HTQ   +K   KK HI  I  N G    +KV W RE  E P PV  VF+ DEM D I   
Sbjct: 164 HTQQKLLKMRQKKAHIMEIQVNGGKDVAEKVDWCRERLENPAPVRKVFSPDEMIDVIGVT 223

Query: 590 XXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 411
                   T RW TKKLPRKTHKGLRKVACIGAWHP+RVSF+VARAGQ GYHHRTE+NKK
Sbjct: 224 KGHGFKGVTYRWGTKKLPRKTHKGLRKVACIGAWHPARVSFSVARAGQAGYHHRTELNKK 283

Query: 410 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSI 318
           IYRIGQGIHKKDGKVIKNNASTEYDL++KSI
Sbjct: 284 IYRIGQGIHKKDGKVIKNNASTEYDLTDKSI 314


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  108 bits (259), Expect = 6e-24
 Identities = 50/66 (75%), Positives = 55/66 (83%)
 Frame = -2

Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
           KGC +GPKKR++TLRKSL VHT R A EKI LKFIDTSSKFGHGRFQ PA+K AFMG LK
Sbjct: 231 KGCVVGPKKRVLTLRKSLLVHTSRDAAEKITLKFIDTSSKFGHGRFQHPAEKRAFMGMLK 290

Query: 114 KDRIRE 97
            DR +E
Sbjct: 291 SDREKE 296


>SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 90.2 bits (214), Expect = 2e-18
 Identities = 39/42 (92%), Positives = 42/42 (100%)
 Frame = -3

Query: 443 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSI 318
           GYHHRTE+NKKIYRIGQGIHKKDGKVIKNNASTEYDL++KSI
Sbjct: 2   GYHHRTELNKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSI 43


>SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)
          Length = 458

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 28  NVYFHGLHLRLRSSRWGCGSRSFFANTILLE 120
           N+Y HG+ L LR   +GCGS       +L++
Sbjct: 368 NIYSHGVRLFLRYLGYGCGSDGALPYCVLMD 398


>SB_37999| Best HMM Match : RVT_1 (HMM E-Value=7.5e-10)
          Length = 874

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -3

Query: 458 RAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSIK 315
           R   K YH RT  +     +GQ I +K   ++ N    E+ LS K IK
Sbjct: 652 RKQAKHYHDRTAKSLPSLVVGQPIRRKSRNILNNTTILEH-LSAKLIK 698


>SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 273 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG 124
           K R++  +K  ++H+  +   K  ++F+   SKF H    T A   A  G
Sbjct: 317 KDRLLEWKKERQIHSFSSTTLKARIRFVAAMSKFAHTTEDTTAWDEATKG 366


>SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)
          Length = 545

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -1

Query: 160 IPDAG*QGCIHGYTQEGSYSRRSCGYHNPSGCCAALSVVREN 35
           I D G   CIH +T +G Y    C + +  G        REN
Sbjct: 410 ISDDG-ANCIHVFTLDGQYVSNECSWESHEGYTHIAVTAREN 450


>SB_20506| Best HMM Match : Lig_chan (HMM E-Value=2.7)
          Length = 570

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 21/57 (36%), Positives = 28/57 (49%)
 Frame = +3

Query: 312 LFNGFLRQIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPR 482
           LF   +  I  SR + F+N A  F  S  +T  FLV   T +  F T    S+R+PR
Sbjct: 114 LFMLHVTHITSSRIVRFSNMA--FTTSYQDT-SFLVKQFTSLTLFATHVFMSKRYPR 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,051,547
Number of Sequences: 59808
Number of extensions: 447484
Number of successful extensions: 932
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)