Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_M13
(778 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi... 155 3e-38
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi... 154 5e-38
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi... 154 5e-38
At3g12770.1 68416.m01594 pentatricopeptide (PPR) repeat-containi... 32 0.37
At4g20470.1 68417.m02986 hypothetical protein 30 1.5
At4g38360.2 68417.m05424 expressed protein contains Pfam profile... 28 6.0
At4g28680.1 68417.m04098 tyrosine decarboxylase, putative simila... 28 6.0
At5g22400.1 68418.m02613 rac GTPase activating protein, putative... 28 7.9
>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
to ribosomal protein GI:806279 from [Arabidopsis
thaliana]
Length = 390
Score = 155 bits (376), Expect = 3e-38
Identities = 79/151 (52%), Positives = 98/151 (64%), Gaps = 1/151 (0%)
Frame = -3
Query: 767 HTQMXXVKQXX-KKXHIXXIXXNXGTXEDKVRWAREHXEKPIPVDSVFAQDEMXDCIXXX 591
HTQ+ +K KK H+ I N G KV +A EK +PVD++F +DEM D I
Sbjct: 165 HTQIRKMKGLKQKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVT 224
Query: 590 XXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 411
+RW +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKK 284
Query: 410 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSI 318
+YR+G K G+ ++A TEYD +EK I
Sbjct: 285 VYRVG-----KVGQE-THSAMTEYDRTEKDI 309
Score = 81.8 bits (193), Expect = 5e-16
Identities = 37/61 (60%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Frame = -2
Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG-TL 118
KGCC+GPKKR++TLR++L T R A+E+I LKFID +S GHGRFQT +KA F G T+
Sbjct: 329 KGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGRTI 388
Query: 117 K 115
K
Sbjct: 389 K 389
>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 154 bits (374), Expect = 5e-38
Identities = 79/151 (52%), Positives = 97/151 (64%), Gaps = 1/151 (0%)
Frame = -3
Query: 767 HTQMXXVKQXX-KKXHIXXIXXNXGTXEDKVRWAREHXEKPIPVDSVFAQDEMXDCIXXX 591
HTQ+ +K KK H+ I N GT KV +A EK IP+++VF +DEM D I
Sbjct: 165 HTQIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVT 224
Query: 590 XXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 411
+RW +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKK
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKK 284
Query: 410 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSI 318
IYR+G K G + A TEYD +EK +
Sbjct: 285 IYRLG-----KVG-TEAHTAMTEYDRTEKDV 309
Score = 85.8 bits (203), Expect = 3e-17
Identities = 38/61 (62%), Positives = 46/61 (75%)
Frame = -2
Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
KGCC+GPKKR++TLR+SL T R ALE+I LKFIDT+S FGHGRFQT +K F +
Sbjct: 329 KGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVT 388
Query: 114 K 112
K
Sbjct: 389 K 389
>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 154 bits (374), Expect = 5e-38
Identities = 79/151 (52%), Positives = 97/151 (64%), Gaps = 1/151 (0%)
Frame = -3
Query: 767 HTQMXXVKQXX-KKXHIXXIXXNXGTXEDKVRWAREHXEKPIPVDSVFAQDEMXDCIXXX 591
HTQ+ +K KK H+ I N GT KV +A EK IP+++VF +DEM D I
Sbjct: 165 HTQIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVT 224
Query: 590 XXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 411
+RW +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKK
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKK 284
Query: 410 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSI 318
IYR+G K G + A TEYD +EK +
Sbjct: 285 IYRLG-----KVG-TEAHTAMTEYDRTEKDV 309
Score = 85.8 bits (203), Expect = 3e-17
Identities = 38/61 (62%), Positives = 46/61 (75%)
Frame = -2
Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
KGCC+GPKKR++TLR+SL T R ALE+I LKFIDT+S FGHGRFQT +K F +
Sbjct: 329 KGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVT 388
Query: 114 K 112
K
Sbjct: 389 K 389
>At3g12770.1 68416.m01594 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 719
Score = 32.3 bits (70), Expect = 0.37
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -3
Query: 536 RKTHKGLRK-VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 360
R KGL K V C +W R R G K + E+ +++ I + K+G +
Sbjct: 550 RMKEKGLNKDVGC--SWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRL--KEGGFVA 605
Query: 359 NNASTEYDLSEKSIKQRLC 303
N ++ +DL+++ ++ LC
Sbjct: 606 NKDASLHDLNDEEAEETLC 624
>At4g20470.1 68417.m02986 hypothetical protein
Length = 140
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +3
Query: 297 IITKSLFNGFLRQIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTSTSYSERH 476
I + SLF F ++ +L C+ NN A + +++ FL+ ++ F + SY
Sbjct: 72 IFSLSLFFSFSQKSLLRSCLSLNNVAPFSISTITQLFFFLLSLNSCFPKFSGTLSYLCLD 131
Query: 477 PRRMPSS 497
+P+S
Sbjct: 132 SSYLPNS 138
>At4g38360.2 68417.m05424 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 485
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -3
Query: 476 VSFTVARAGQKGYHHRTEMNKKIYRIGQGI--HKKDGKVIKNNASTEYDLSEKSIK 315
V FTV +A + T+ N+K+++I Q I H K+ + +K+++ S + I+
Sbjct: 373 VRFTVTQAVEPMEKSITKFNEKLHKISQNIKKHDKEKRRVKDDSCMSSSPSRRVIR 428
>At4g28680.1 68417.m04098 tyrosine decarboxylase, putative similar
to SP|P54768 Tyrosine/DOPA decarboxylase 1 [Includes:
DOPA decarboxylase (EC 4.1.1.28) (DDC); Tyrosine
decarboxylase (EC 4.1.1.25)] {Papaver somniferum},
SP|Q06086 Tyrosine decarboxylase 2 (EC 4.1.1.25)
{Petroselinum crispum}; contains Pfam profile PF00282:
Pyridoxal-dependent decarboxylase conserved domain
Length = 545
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/40 (30%), Positives = 27/40 (67%)
Frame = -3
Query: 416 KKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSIKQRLCDD 297
+K IG GIH+++ +++K ++ST Y + +S+++ + D
Sbjct: 249 RKACLIG-GIHEENIRLLKTDSSTNYGMPPESLEEAISHD 287
>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
similar to rac GTPase activating protein 1 [Lotus
japonicus] GI:3695059; contains Pfam profile PF00620:
RhoGAP domain
Length = 466
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -3
Query: 206 STSNSLTPRPSSVMVDSRRRLTRLHSWVHSRR 111
S+S+S +P PSS+ SR T L S H+RR
Sbjct: 17 SSSSSSSPSPSSLSYASRSNATLLISSDHNRR 48
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,125,854
Number of Sequences: 28952
Number of extensions: 298414
Number of successful extensions: 734
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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