Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_M11
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   111   1e-25
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   107   2e-24
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    33   0.063
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.4  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    27   2.4  
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    26   5.5  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.5  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  111 bits (266), Expect = 1e-25
 Identities = 53/79 (67%), Positives = 60/79 (75%)
 Frame = -1

Query: 595 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 416
           P  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+R
Sbjct: 129 PRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVR 188

Query: 415 GVLPRDQRWDVVVDLFFYR 359
           G L R   WDV+ DL+FYR
Sbjct: 189 GTLSRSAPWDVMPDLYFYR 207



 Score = 79.4 bits (187), Expect = 6e-16
 Identities = 39/61 (63%), Positives = 44/61 (72%)
 Frame = -2

Query: 804 LVLAARAVVAIEXPADVXVISSRPFGQRAVLKFAAHTGATXIADVSXPGAFTNQIQAAFR 625
           LVLAAR +  IE PADV V+S+R +G RAVLKFAAHTGAT IA    PG FTN I   +R
Sbjct: 60  LVLAARVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYR 119

Query: 624 E 622
           E
Sbjct: 120 E 120


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  107 bits (256), Expect = 2e-24
 Identities = 51/79 (64%), Positives = 59/79 (74%)
 Frame = -1

Query: 595 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 416
           P  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLR
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLR 189

Query: 415 GVLPRDQRWDVVVDLFFYR 359
           G + R   W+V+ DL+FYR
Sbjct: 190 GNISRTTAWEVMPDLYFYR 208



 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 42/61 (68%), Positives = 45/61 (73%)
 Frame = -2

Query: 804 LVLAARAVVAIEXPADVXVISSRPFGQRAVLKFAAHTGATXIADVSXPGAFTNQIQAAFR 625
           LVLAAR +  IE PADV VISSRP+G RAVLKFAAHTGAT IA    PG FTN I   +R
Sbjct: 61  LVLAARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYR 120

Query: 624 E 622
           E
Sbjct: 121 E 121


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 32.7 bits (71), Expect = 0.063
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -1

Query: 595 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 434
           P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 188 PLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 571 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 461
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 629 NAAWIWLVKAPGCETSAIXVAPVCAA 706
           +A W WL+   GC   A+ VA + +A
Sbjct: 95  SAVWCWLIAGAGCMCIALSVAELVSA 120


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 344 LSSGXTVEEQINHNIPALVTGKHTTKPQHFTCQQ 445
           LSS  T   Q+ +N P   T K   K +HF  QQ
Sbjct: 35  LSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQ 68


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 463 IGLMWWLLAREVLRLRGVLPRDQRWD 386
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,671
Number of Sequences: 5004
Number of extensions: 51369
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)