SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_M11
         (805 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   109   3e-24
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   109   3e-24
01_06_0847 + 32411521-32411619,32411737-32411851,32412292-324123...    33   0.27 
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.3  
06_03_0543 + 21967787-21970261                                         29   5.7  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   7.6  
04_04_0907 + 29304830-29305030,29305296-29305547                       28   7.6  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  109 bits (262), Expect = 3e-24
 Identities = 47/79 (59%), Positives = 59/79 (74%)
 Frame = -1

Query: 595 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 416
           P  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++WLLAR VL++R
Sbjct: 131 PRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMR 190

Query: 415 GVLPRDQRWDVVVDLFFYR 359
           G +    +WDV+VDLFFYR
Sbjct: 191 GTILPGHKWDVMVDLFFYR 209



 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 40/70 (57%), Positives = 47/70 (67%)
 Frame = -2

Query: 804 LVLAARAVVAIEXPADVXVISSRPFGQRAVLKFAAHTGATXIADVSXPGAFTNQIQAAFR 625
           L LAAR +VAIE P D+ V S+RP+GQRAVLKFA +TGA  IA    PG FTNQ+Q +F 
Sbjct: 62  LQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFS 121

Query: 624 EXSSLDCIGP 595
           E   L    P
Sbjct: 122 EPRLLILTDP 131


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  109 bits (262), Expect = 3e-24
 Identities = 47/79 (59%), Positives = 60/79 (75%)
 Frame = -1

Query: 595 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 416
           P  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K  +SIG ++WLLAR VL++R
Sbjct: 131 PRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMR 190

Query: 415 GVLPRDQRWDVVVDLFFYR 359
           G +    +WDV+VDLFFYR
Sbjct: 191 GTILPGHKWDVMVDLFFYR 209



 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 40/70 (57%), Positives = 47/70 (67%)
 Frame = -2

Query: 804 LVLAARAVVAIEXPADVXVISSRPFGQRAVLKFAAHTGATXIADVSXPGAFTNQIQAAFR 625
           L LAAR +VAIE P D+ V S+RP+GQRAVLKFA +TGA  IA    PG FTNQ+Q +F 
Sbjct: 62  LQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFS 121

Query: 624 EXSSLDCIGP 595
           E   L    P
Sbjct: 122 EPRLLILTDP 131


>01_06_0847 +
           32411521-32411619,32411737-32411851,32412292-32412375,
           32412430-32413478,32414690-32416371,32416477-32416586,
           32417634-32418430,32418839-32418951,32419147-32419194,
           32419425-32419652,32419732-32419829,32419967-32420019
          Length = 1491

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
 Frame = -2

Query: 765 PAD--VXVISSRPFGQRAVLKFAAHTGATXIADVSXPGAFTNQIQAAFREXSSLDCIGPL 592
           P+D  + V+S  PF Q+A+   ++  GAT + D    G    + +       S DC+   
Sbjct: 578 PSDRALPVVSGDPFQQKALQ--SSMFGATEVTDKMPKG--DKKRKRTKMSLKSTDCLSSK 633

Query: 591 HKTINPLLKLHMSTFL*LLCA 529
           HK ++  +K H ST   +LC+
Sbjct: 634 HKRLHLEMKAHDSTSNGILCS 654


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301



 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 207 TRCSSCFWSTPCSRRMVCPGTR 142
           TRC  C    P   R  CPG+R
Sbjct: 81  TRCKECLARAPAGVRQECPGSR 102


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 457 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 368
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


>04_04_0907 + 29304830-29305030,29305296-29305547
          Length = 150

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 604 YWTPAQDHQPITE-ASYVNIPVIALCNTDSPLRFVDIAIPCNT 479
           Y  P  D   + E A+  NIP+I L + D P    +IA  C T
Sbjct: 20  YARPESDRPRLAEVATDSNIPLIDLASPDKPRVIAEIAQACRT 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,594,332
Number of Sequences: 37544
Number of extensions: 373595
Number of successful extensions: 960
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -