Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_M11
         (805 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               131   7e-31
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   36   0.038
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)                  30   2.5  
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)                 29   4.4  
SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)               29   4.4  
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.4  
SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)                      29   5.8  
SB_12737| Best HMM Match : C_tripleX (HMM E-Value=0.027)               28   7.7  
SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012)             28   7.7  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  131 bits (316), Expect = 7e-31
 Identities = 57/79 (72%), Positives = 66/79 (83%)
 Frame = -1

Query: 595 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 416
           P  DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K  HSIGLM+WLLAREVLR+R
Sbjct: 127 PRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRMR 186

Query: 415 GVLPRDQRWDVVVDLFFYR 359
           G + R   W+++ DL+FYR
Sbjct: 187 GSISRALPWEIMPDLYFYR 205



 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 46/70 (65%), Positives = 53/70 (75%)
 Frame = -2

Query: 804 LVLAARAVVAIEXPADVXVISSRPFGQRAVLKFAAHTGATXIADVSXPGAFTNQIQAAFR 625
           L+LAAR +V IE PADV VIS+RP+GQRA+LK+A+HTGAT IA    PG FTNQIQAAFR
Sbjct: 58  LLLAARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFR 117

Query: 624 EXSSLDCIGP 595
           E   L    P
Sbjct: 118 EPRLLIVCDP 127


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 35.9 bits (79), Expect = 0.038
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +3

Query: 372  KSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKA 539
            K+TT   RWS+G TP      ++   H   I    L+ HG   ST NL+ E    VL++ 
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453

Query: 540  ITGMLTY 560
              G +TY
Sbjct: 1454 ELGTMTY 1460


>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
          Length = 315

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 469 HSIGLMWWLLAREVLRLRGVLP 404
           H  G +WW+L  E LR + VLP
Sbjct: 46  HDDGSVWWVLTSESLRAKAVLP 67


>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 195  SCFWSTPCSRRMVCPGTR*VEHNCRRTSRRHRSA 94
            +C W+ P   R+  PG R   H    T+R H +A
Sbjct: 904  TCSWALPAHYRVHVPGQRSASHEAFDTTRPHENA 937


>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
          Length = 1604

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 748  HLITAXRSACCTEVCRAHRCYAYCGRF 668
            + + + R +  T++ R HRC  YC +F
Sbjct: 1549 YALVSPRESIATDIHRVHRCIGYCPQF 1575


>SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)
          Length = 418

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 367 RTNQPQHPSAGHGEA-HHEASTLHVPTTTTSNQ*SGKTWCC 486
           R  QP H ++ +  A HH A  LH P  +TS   +   W C
Sbjct: 176 RDGQPCHGASMNNFAYHHAADFLHYPPVSTSYMPAHPYWTC 216


>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +3

Query: 360 R*KNKSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDL---VLHGIAMSTNLSGESVL 530
           R  N+  T   ++   STP      + N+  ++P EW ++     H   +   L+GES  
Sbjct: 3   RGSNRRPTFKYKFGDSSTPFYSALKKQNDRSMRPWEWHEMKARYSHAQTLINALTGESKY 62

Query: 531 HKAITG 548
              +TG
Sbjct: 63  EFTLTG 68


>SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1601

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 411 TPRSLNTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLH 533
           T +SLN S  N   + P EW + V+ G+     LSG ++L+
Sbjct: 864 TAQSLNVSVDNLKFLAPTEWRE-VIPGLKQEILLSGSNMLN 903


>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
          Length = 487

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 359 TVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGR-LGVAWDSNVHK 508
           +V  Q+  + P  +T  HT+     T   P HQ + +GR  G   DSNV +
Sbjct: 241 SVTNQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNVSR 291


>SB_12737| Best HMM Match : C_tripleX (HMM E-Value=0.027)
          Length = 442

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 727 SACCTEVCRAHRCYAYCGRFTXRC 656
           S  C +VC   RC   CGR   RC
Sbjct: 136 SKVCVQVCITGRCTMRCGRGVGRC 159


>SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012)
          Length = 489

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 727 SACCTEVCRAHRCYAYCGRFTXRC 656
           S  C +VC   RC   CGR   RC
Sbjct: 136 SKVCVQVCITGRCTMRCGRGVGRC 159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,431,957
Number of Sequences: 59808
Number of extensions: 437409
Number of successful extensions: 1030
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)