Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_M11
         (805 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   118   6e-27
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   112   2e-25
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   100   2e-21
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa...    29   4.8  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  118 bits (283), Expect = 6e-27
 Identities = 50/79 (63%), Positives = 61/79 (77%)
 Frame = -1

Query: 595 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 416
           P  DHQPI E +  NIP+IA C+TDSP+RFVDI IP N K  HSIG ++WLLAR VL++R
Sbjct: 131 PRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMR 190

Query: 415 GVLPRDQRWDVVVDLFFYR 359
           G +   Q+WDV+VDLFFYR
Sbjct: 191 GTIAAGQKWDVMVDLFFYR 209



 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 39/70 (55%), Positives = 47/70 (67%)
 Frame = -2

Query: 804 LVLAARAVVAIEXPADVXVISSRPFGQRAVLKFAAHTGATXIADVSXPGAFTNQIQAAFR 625
           L +AAR +VAIE P D+ V S+RP+GQRAVLKFA +TGA  IA    PG FTNQ+Q +F 
Sbjct: 62  LQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFS 121

Query: 624 EXSSLDCIGP 595
           E   L    P
Sbjct: 122 EPRLLILTDP 131


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  112 bits (270), Expect = 2e-25
 Identities = 49/79 (62%), Positives = 59/79 (74%)
 Frame = -1

Query: 595 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 416
           P  DHQPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++R
Sbjct: 132 PRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMR 191

Query: 415 GVLPRDQRWDVVVDLFFYR 359
           G +   Q+WDV+VDLFFYR
Sbjct: 192 GTILAAQKWDVMVDLFFYR 210



 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 38/70 (54%), Positives = 46/70 (65%)
 Frame = -2

Query: 804 LVLAARAVVAIEXPADVXVISSRPFGQRAVLKFAAHTGATXIADVSXPGAFTNQIQAAFR 625
           L +AAR +VAIE P D+ V S+RP+GQRAVLKFA +TG   IA    PG FTNQ+Q +F 
Sbjct: 63  LQMAARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFS 122

Query: 624 EXSSLDCIGP 595
           E   L    P
Sbjct: 123 EPRLLILTDP 132


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 43/74 (58%), Positives = 54/74 (72%)
 Frame = -1

Query: 595 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 416
           P  DHQPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++R
Sbjct: 132 PRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMR 191

Query: 415 GVLPRDQRWDVVVD 374
           G +   Q+WDV+V+
Sbjct: 192 GTILAAQKWDVMVN 205



 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 38/70 (54%), Positives = 46/70 (65%)
 Frame = -2

Query: 804 LVLAARAVVAIEXPADVXVISSRPFGQRAVLKFAAHTGATXIADVSXPGAFTNQIQAAFR 625
           L +AAR +VAIE P D+ V S+RP+GQRAVLKFA +TG   IA    PG FTNQ+Q +F 
Sbjct: 63  LQMAARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFS 122

Query: 624 EXSSLDCIGP 595
           E   L    P
Sbjct: 123 EPRLLILTDP 132


>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 146

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -1

Query: 523 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 386
           D  L   ++A+ C TKS   +    +  ++ V  +   +P  +RWD
Sbjct: 49  DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,300,674
Number of Sequences: 28952
Number of extensions: 285990
Number of successful extensions: 706
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)