Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_M07
         (858 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U75370-1|AAB58255.1| 1230|Homo sapiens mitochondrial RNA polymer...    30   9.4  
BC098387-1|AAH98387.1| 1230|Homo sapiens polymerase (RNA) mitoch...    30   9.4  
AC004449-1|AAC06147.1| 1230|Homo sapiens RPOM_HUMAN protein.           30   9.4  
AB209920-1|BAD93157.1| 1072|Homo sapiens DNA-directed RNA polyme...    30   9.4  

>U75370-1|AAB58255.1| 1230|Homo sapiens mitochondrial RNA polymerase
           protein.
          Length = 1230

 Score = 30.3 bits (65), Expect = 9.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 730 IPVXXXPAPWTSNHXGXFLL 789
           +P+   P PWTS H G FLL
Sbjct: 646 VPMLCPPLPWTSPHSGAFLL 665


>BC098387-1|AAH98387.1| 1230|Homo sapiens polymerase (RNA)
           mitochondrial (DNA directed) protein.
          Length = 1230

 Score = 30.3 bits (65), Expect = 9.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 730 IPVXXXPAPWTSNHXGXFLL 789
           +P+   P PWTS H G FLL
Sbjct: 646 VPMLCPPLPWTSPHSGAFLL 665


>AC004449-1|AAC06147.1| 1230|Homo sapiens RPOM_HUMAN protein.
          Length = 1230

 Score = 30.3 bits (65), Expect = 9.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 730 IPVXXXPAPWTSNHXGXFLL 789
           +P+   P PWTS H G FLL
Sbjct: 646 VPMLCPPLPWTSPHSGAFLL 665


>AB209920-1|BAD93157.1| 1072|Homo sapiens DNA-directed RNA
           polymerase variant protein.
          Length = 1072

 Score = 30.3 bits (65), Expect = 9.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 730 IPVXXXPAPWTSNHXGXFLL 789
           +P+   P PWTS H G FLL
Sbjct: 488 VPMLCPPLPWTSPHSGAFLL 507


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,716,758
Number of Sequences: 237096
Number of extensions: 1220111
Number of successful extensions: 2263
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2262
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10928473528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)