Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_M07
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   1.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   8.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   8.3  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 312 SLISNLSNTCDLTPLPEWSCEQSAWWGACGRVL 214
           SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 640 EILEXFXXAXXSTLRPXFRGPP 705
           E+L+       +++RP F GPP
Sbjct: 8   ELLDNLLRGYDNSVRPDFGGPP 29


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 643 ILEXFXXAXXSTLRPXFRGPP 705
           IL+ F  +    +RP + GPP
Sbjct: 15  ILDSFSVSYDKRVRPNYGGPP 35


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 643 ILEXFXXAXXSTLRPXFRGPP 705
           IL+ F  +    +RP + GPP
Sbjct: 15  ILDSFSVSYDKRVRPNYGGPP 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,617
Number of Sequences: 438
Number of extensions: 1833
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)