Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_M06
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0088 + 12327339-12328092,12329474-12329601,12330249-123304... 33 0.20
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 0.81
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.3
10_05_0065 + 8736744-8738879 29 5.7
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.7
06_02_0240 + 13397512-13397856 29 5.7
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 5.7
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 28 7.6
11_06_0578 + 25176304-25176388,25176503-25177032,25177267-251779... 28 7.6
02_02_0671 - 12811102-12811608 28 7.6
01_01_1237 - 10047417-10047934,10048899-10049136 28 7.6
08_02_1418 - 26931896-26932339,26932435-26932668,26932805-269331... 28 10.0
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 28 10.0
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 10.0
01_05_0014 - 17162664-17163500 28 10.0
>01_03_0088 +
12327339-12328092,12329474-12329601,12330249-12330474,
12332638-12332765,12332880-12333033,12333408-12333841
Length = 607
Score = 33.5 bits (73), Expect = 0.20
Identities = 22/56 (39%), Positives = 26/56 (46%)
Frame = -2
Query: 505 VSPPYFQVNDESQASRLISRHSTHTPLPSSNSPTHRRRRHGHKPSHHRL*SQNRRQ 338
+SPP Q S+A R S PLP+ P HRR PS RL S RR+
Sbjct: 1 MSPPPPQRPSPSRAGRANLFSSPPPPLPNCYDPKHRRPAPPPLPSARRLPSNRRRR 56
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 31.5 bits (68), Expect = 0.81
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Frame = -2
Query: 655 HTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSA-YLTPSSLGMAKGVSPPYFQ 485
++PT+P TS + +P +P +PG P S +PS+ PSS+ +
Sbjct: 1766 YSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYSPSS 1825
Query: 484 VNDESQASRLISRHSTHTPLPS-SNSPTHRRRRHGHK 377
N S S S S PS S SPT R H+
Sbjct: 1826 PNYYSSTSPTYSPTSPSYSQPSPSYSPTSRVEEEAHE 1862
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 84 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 185
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>10_05_0065 + 8736744-8738879
Length = 711
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1
Query: 394 VFDEWVSWRRGAEYAW 441
VFD W SWR GA+ AW
Sbjct: 181 VFDRWTSWRPGAD-AW 195
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 76 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 222
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>06_02_0240 + 13397512-13397856
Length = 114
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/58 (32%), Positives = 23/58 (39%)
Frame = -2
Query: 535 TPSSLGMAKGVSPPYFQVNDESQASRLISRHSTHTPLPSSNSPTHRRRRHGHKPSHHR 362
TPS LGM V E A+R + P P +H RRR G +P R
Sbjct: 53 TPSLLGMLTQVKCLVVVETQEMYAARRQAEEDRRAPRPPL-IVSHTRRRRGERPPQRR 109
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -3
Query: 243 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 64
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 63 ILHSF 49
+LHSF
Sbjct: 1408 LLHSF 1412
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 28.3 bits (60), Expect = 7.6
Identities = 23/70 (32%), Positives = 31/70 (44%)
Frame = -2
Query: 571 PPLSSEAPSAYLTPSSLGMAKGVSPPYFQVNDESQASRLISRHSTHTPLPSSNSPTHRRR 392
PP + + P+ PS+ AK ++PP R S ST TP S SP RR
Sbjct: 177 PPFALQPPTPSWRPSTPPSAKTLTPP----------RRSPSPASTLTPPRRSPSPASRRM 226
Query: 391 RHGHKPSHHR 362
G P+ +R
Sbjct: 227 STGSTPALNR 236
>11_06_0578 +
25176304-25176388,25176503-25177032,25177267-25177997,
25178122-25178172,25178562-25178813,25178894-25179004,
25179102-25179183,25179460-25179489
Length = 623
Score = 28.3 bits (60), Expect = 7.6
Identities = 25/87 (28%), Positives = 35/87 (40%)
Frame = -2
Query: 571 PPLSSEAPSAYLTPSSLGMAKGVSPPYFQVNDESQASRLISRHSTHTPLPSSNSPTHRRR 392
PP S+ P+ L A SPP S S L S ST+TP+ S + H RR
Sbjct: 395 PPSPSQQPT--LPAPQPVQASPTSPPK---QHASPGSALSSSLSTYTPICSGRTSAHTRR 449
Query: 391 RHGHKPSHHRL*SQNRRQ*FSNS*GTG 311
+ + S ++ F + TG
Sbjct: 450 NSEKRKELAHVMSDSQNMQFHEADRTG 476
>02_02_0671 - 12811102-12811608
Length = 168
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = -2
Query: 562 SSEAPSAYLTPSSLGMAKGVSPPYFQVNDESQASRLISRHSTHTPLPSSNSPT 404
++ A + YL+PS + G S + +V +R ++ +TH+PLP SPT
Sbjct: 86 TATAKAFYLSPSPPLLPFGASHSFAKVCTIEAKAR--NKPATHSPLPKPYSPT 136
>01_01_1237 - 10047417-10047934,10048899-10049136
Length = 251
Score = 28.3 bits (60), Expect = 7.6
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 583 PGLKPPLSSEAPSAYLTPSSLGMAKGVSPPYFQVNDESQASRLISRHSTHTPL-PSSNSP 407
P L+PP ++EAP PSS A +PP F + S + ST PL + ++P
Sbjct: 168 PDLRPP-AAEAPG----PSSSAGAAADAPPTFDFSHPKNVSNSPADTSTTAPLDDADDAP 222
Query: 406 T 404
T
Sbjct: 223 T 223
>08_02_1418 -
26931896-26932339,26932435-26932668,26932805-26933110,
26933462-26933644,26934386-26934493
Length = 424
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/55 (32%), Positives = 22/55 (40%)
Frame = -2
Query: 532 PSSLGMAKGVSPPYFQVNDESQASRLISRHSTHTPLPSSNSPTHRRRRHGHKPSH 368
PSSLGM + +SPP V+ E R L S R G +P H
Sbjct: 329 PSSLGMGRALSPPKMSVDLEMGMKRQTVAMEELEDLHSQIGSAMGLERCGTEPPH 383
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 27.9 bits (59), Expect = 10.0
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Frame = -2
Query: 655 HTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKGVSPPYFQV 482
++PT+P TS S +P +P +P P + +PS +PSS ++ PY Q
Sbjct: 1718 YSPTSPGYSPTSPSYSPTSPNYSPTSPSYNPSSAKYSPSHAYSPSSPRLS-----PYSQT 1772
Query: 481 N-DESQASRLISRHSTHTPLPS-SNSPT 404
+ + S S S S PS S SPT
Sbjct: 1773 SPNYSPTSPTYSPTSPSYSQPSPSYSPT 1800
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 444 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 355
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
>01_05_0014 - 17162664-17163500
Length = 278
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = -2
Query: 577 LKPPLSSEAPSAYLTPSSLGMAKGVSPP---YFQVNDESQASRLISRHSTHTPLPSS 416
+K + ++P+ TP LG+ K PP Y ++ +++T T PS+
Sbjct: 87 IKTKIRGDSPARQPTPGELGLLKAAPPPAERYVGTLFTKAGDEVLHKYTTPTATPST 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,375,721
Number of Sequences: 37544
Number of extensions: 478491
Number of successful extensions: 1547
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1540
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -