Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_M06
(803 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10) 35 0.089
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 31 0.83
SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52) 31 1.4
SB_23156| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_59554| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89) 29 3.3
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 29 3.3
SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06) 29 4.4
SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07) 29 5.8
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6) 28 7.7
>SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)
Length = 968
Score = 34.7 bits (76), Expect = 0.089
Identities = 36/108 (33%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Frame = -2
Query: 655 HTPTTPDLTSISINPL--TPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKGVSPPYFQV 482
+TP+T LT +NP T Y + PG P E AY TPS+ + V P
Sbjct: 753 YTPSTHTLTR-PVNPRLHTQYTHTYTPGTPTPTQREYTHAY-TPSTPTPTRPVHP----- 805
Query: 481 NDESQASRLISRHSTHTPLPSSNSPTHR-------RRRHGHKPSHHRL 359
RL + + TH PS+ SPTHR + H + P H RL
Sbjct: 806 -------RLHTEY-THAYTPSTPSPTHRVHTRLHTKYTHAYTPIHPRL 845
Score = 30.3 bits (65), Expect = 1.9
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Frame = -2
Query: 655 HTPTTPDLTSISI-NPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKGVSPPYFQVN 479
+TP+TP T + TP + + P L +E AY TPS+ + V P
Sbjct: 652 YTPSTPTPTHAEYTHAYTPSTQTPTCPVHPRLHTEYTHAY-TPSTPTPTRPVHPRLHTEY 710
Query: 478 DESQASRLISR-HS--THTPLPSSNSPT-------HRRRRHGHKPSHHRL 359
+ R+ R H+ TH PS+++PT H + H + PS H L
Sbjct: 711 IHAYTRRVHPRLHAQYTHAYTPSTHTPTRPVHPHLHAQYTHAYTPSTHTL 760
Score = 28.7 bits (61), Expect = 5.8
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = -2
Query: 655 HTPTTPDLTS-ISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKGVSPPYFQVN 479
+TP+TP T + T Y + P + P L +E AY TPS+ P +V+
Sbjct: 815 YTPSTPSPTHRVHTRLHTKYTHAYTP-IHPRLHAEYTHAY-TPST-------PKPTHRVH 865
Query: 478 DESQASRLISRHSTHTPLPSSNSPTHRRRRHGHKPSHHR 362
A THT PS+ +PTH H + H+
Sbjct: 866 PSLHAGY------THTYTPSTPTPTHAEYTHAYTRRVHK 898
Score = 28.3 bits (60), Expect = 7.7
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Frame = -2
Query: 655 HTPTTPDLTSISINPL--TPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKGVSPPYFQ- 485
+TP+TP T ++P T Y + + P L ++ AY TPS+ + V P
Sbjct: 691 YTPSTPTPTR-PVHPRLHTEYIHAYTRRVHPRLHAQYTHAY-TPSTHTPTRPVHPHLHAQ 748
Query: 484 -VNDESQASRLISR------HS--THTPLPSSNSPTHRRRRHGHKPS 371
+ + ++ ++R H+ THT P + +PT R H + PS
Sbjct: 749 YTHAYTPSTHTLTRPVNPRLHTQYTHTYTPGTPTPTQREYTHAYTPS 795
>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2437
Score = 32.3 bits (70), Expect = 0.47
Identities = 20/73 (27%), Positives = 32/73 (43%)
Frame = -2
Query: 589 FAPGLKPPLSSEAPSAYLTPSSLGMAKGVSPPYFQVNDESQASRLISRHSTHTPLPSSNS 410
FA P SS++PSA +P+S SP F + E + +IS+ + +S
Sbjct: 1096 FATTTMSPTSSQSPSAVTSPTSPRSPSNPSPASFGFHSEDEPVTMISKSISSLATGTSKP 1155
Query: 409 PTHRRRRHGHKPS 371
T +G+ S
Sbjct: 1156 KTQNPAFYGNTTS 1168
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 31.5 bits (68), Expect = 0.83
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 448 RHSTHTPLPSSNSPTHRRRRHGHKPSHHRL*SQNR-RQ*FSNS 323
R +HTP S SP +RH + +HR S++R R+ SNS
Sbjct: 233 RKGSHTPKKRSRSPRRNSQRHKERSRYHRSRSRSRHRRSRSNS 275
>SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)
Length = 516
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = -2
Query: 649 PTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKGVSPPYFQVNDES 470
P TP S S P++P + P +P +PS LT + + ++P + +V++E
Sbjct: 51 PKTPSEPSDSPGPMSPEPEIMTPTPEPSPKHRSPSPKLTKTPTPPSWSLTPLHDEVDEEE 110
Query: 469 QASRLISRHSTH--TPL 425
+ S + R S TPL
Sbjct: 111 EGSFVQFRCSPQRMTPL 127
>SB_23156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/85 (27%), Positives = 38/85 (44%)
Frame = -2
Query: 643 TPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKGVSPPYFQVNDESQA 464
TP +S SI+ +P + L PP + P + LTP S ++ ++P + +
Sbjct: 153 TPAGSSSSISLASPGMRSSLGSLTPPSRTSTPRSRLTPRSRSRSRTITPS----TPSTTS 208
Query: 463 SRLISRHSTHTPLPSSNSPTHRRRR 389
SR SR S ++ T R+ R
Sbjct: 209 SRASSRGSARGGAKTTKKCTTRKSR 233
>SB_59554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1247
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -2
Query: 556 EAPSAYLTPSSLGMAKGVSPPYFQVNDESQASRLISRHSTHTPLPSSNS 410
EA +P +LG ++ P + E A+ S H THTP P SNS
Sbjct: 666 EALRVVQSPVALGPSE---PQGLRARAEDAAAGTASAHITHTPAPESNS 711
>SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 451 SRHSTHTPLPSSNSPTHRRRRHGHKPSHH 365
S S+ +PLP S+S H RRH H HH
Sbjct: 11 SSSSSSSPLPLSSSHNHHHRRHYH--CHH 37
>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
Length = 1494
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/51 (41%), Positives = 25/51 (49%)
Frame = -2
Query: 562 SSEAPSAYLTPSSLGMAKGVSPPYFQVNDESQASRLISRHSTHTPLPSSNS 410
SS PS +LTPSSL SP F + S + L S S L SS+S
Sbjct: 945 SSSLPSDFLTPSSLLSDFLSSPSDFLTSSSSLSDFLTSSSSLRVFLTSSSS 995
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/66 (25%), Positives = 34/66 (51%)
Frame = -3
Query: 240 PFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SLI 61
P D + +N+ +VL DNKT L+ + +P S + + +P ++ + S ++ +
Sbjct: 2292 PVDAIWIENLNSVLDDNKTLTLANGDR--IPMSPQCKIVFEPHNIDNASPATVSRNGMVY 2349
Query: 60 LHSFGL 43
+ S GL
Sbjct: 2350 MSSSGL 2355
>SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)
Length = 1532
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -3
Query: 240 PFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDS 94
P D + +N+ +VL DNKT L+ + +P S + + +P ++ + S
Sbjct: 1384 PVDAIWIENLNSVLDDNKTLTLANGDR--IPMSPTCKVVFEPHNIDNAS 1430
>SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)
Length = 592
Score = 28.7 bits (61), Expect = 5.8
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Frame = -3
Query: 360 YKVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLK---DN 190
+ + + DN L T L +K+ G +VFD FDT+ +R + DN
Sbjct: 313 HSLTMIDNEL-TGDPLDIKMFEATG---WVFDEPGE-DNKKFDTIAPSTVRPKTREMTDN 367
Query: 189 KTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVK 76
+ L I+ SS++ R V R + SD VYVK
Sbjct: 368 QVPLEVGIIRQFPFSSDVQRMTVITRILGSDHMDVYVK 405
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -2
Query: 520 GMAKGVSPPYFQVNDESQASRLISRHSTHTPLPSSNSPTHRRRRH 386
G AKGV+ F D S RL+ R T + S+N TH R+
Sbjct: 1872 GAAKGVTMAEFVREDMSVPVRLVGR-ETRAAMMSTNVATHHANRY 1915
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = -2
Query: 652 TPTTPDLTSISINPLTPY*KEFAPGL---KPPLSSEAPSAYLTPSSLGMAKGVSPP 494
TPTTP T+ + P P E P L PP+ + P+ TP++ +PP
Sbjct: 897 TPTTPKPTTPAPPPPLPLAPEPPPPLPPPPPPIQTTRPTVPTTPTTQASTTRPTPP 952
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = -2
Query: 655 HTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKGVSPP 494
+TP+TP S+ P TP P + PS TPS+ K S P
Sbjct: 277 NTPSTPSTPSMPSTPSTPSTPSTPSTPSTPSAPSTPSTPSTPSTPSTPKTPSTP 330
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = -2
Query: 655 HTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKGVSPP 494
+TP+TP S+ P TP P + PS TPS+ K S P
Sbjct: 827 NTPSTPSTPSMPSTPSTPSTPSTPSTPSTPSAPSTPSTPSTPSTPSTPKTPSTP 880
>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4994
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -3
Query: 240 PFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDS 94
P D + +N+ +VL DNKT L+ + +P S + + +P ++ + S
Sbjct: 2286 PVDAIWIENLNSVLDDNKTLTLANGDR--IPMSPQCKVVFEPHNIDNAS 2332
>SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 963
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 652 TPTTPDLTSISINPLTPY 599
TPT PD+T +SI L PY
Sbjct: 75 TPTRPDVTQLSITGLKPY 92
>SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)
Length = 237
Score = 28.3 bits (60), Expect = 7.7
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = -2
Query: 649 PTTPDLTSISINPLTPY*KEFAPGLKPPLSSEA--PSAYLTPSSLGMAKGVSPPYFQVND 476
P P T ++ PY AP + P ++ A P+ Y TP+S G +P Y
Sbjct: 41 PVVPLPTPVAPPSTVPYTATPAPAQQAPHTTAASQPAPY-TPAS-GQPASYTPAYTPYTP 98
Query: 475 ESQASRLISRHSTHTPLPS 419
S R+ S TP P+
Sbjct: 99 ASTVGRMPPTTSQSTPSPA 117
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,427,039
Number of Sequences: 59808
Number of extensions: 503797
Number of successful extensions: 1767
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1723
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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