Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_M02
(779 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0) 200 8e-52
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34) 140 2e-33
SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 1e-20
SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002) 29 3.2
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0) 29 4.2
SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08) 28 7.4
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_5912| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-08) 28 9.8
>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
Length = 338
Score = 200 bits (489), Expect = 8e-52
Identities = 98/144 (68%), Positives = 109/144 (75%), Gaps = 1/144 (0%)
Frame = -3
Query: 768 QKKAHIMESXXXGGT-IXGQSEMGQRTSGEPIPVDSVFAQDEMIDCIXXXXXXXXXXXTS 592
QKKAHIME GG + + + + P PV VF+ DEMID I T
Sbjct: 174 QKKAHIMEIQVNGGKDVAEKVDWCRERLENPAPVRKVFSPDEMIDVIGVTKGHGFKGVTY 233
Query: 591 RWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 412
RW TKKLPRKTHKGLRKVACIGAWHP+RVSF+VARAGQ GYHHRTE+NKKIYRIGQGIHK
Sbjct: 234 RWGTKKLPRKTHKGLRKVACIGAWHPARVSFSVARAGQAGYHHRTELNKKIYRIGQGIHK 293
Query: 411 KDGKVIKNNASTEYDLSEKSITPM 340
KDGKVIKNNASTEYDL++KSI+PM
Sbjct: 294 KDGKVIKNNASTEYDLTDKSISPM 317
>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
Length = 347
Score = 140 bits (338), Expect = 2e-33
Identities = 62/82 (75%), Positives = 70/82 (85%)
Frame = -3
Query: 339 GGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHG 160
GGFPHYG+VN DF+M+KGC +GPKKR++TLRKSL VHT R A EKI LKFIDTSSKFGHG
Sbjct: 215 GGFPHYGQVNEDFLMVKGCVVGPKKRVLTLRKSLLVHTSRDAAEKITLKFIDTSSKFGHG 274
Query: 159 RFQTPADKAAFMGTLKKDRIRE 94
RFQ PA+K AFMG LK DR +E
Sbjct: 275 RFQHPAEKRAFMGMLKSDREKE 296
>SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 97.1 bits (231), Expect = 1e-20
Identities = 42/45 (93%), Positives = 45/45 (100%)
Frame = -3
Query: 474 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 340
GYHHRTE+NKKIYRIGQGIHKKDGKVIKNNASTEYDL++KSITPM
Sbjct: 2 GYHHRTELNKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSITPM 46
>SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 414 KKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIK 289
KK V +N+ T D + + GFPHY + +D + IK
Sbjct: 44 KKCWTVTQNDVPTPLDCGLSAWRILSGFPHYKLIEDDHIEIK 85
>SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)
Length = 458
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 25 NVYFHGLHLRLRSSRWGCGSRSFFANTILLE 117
N+Y HG+ L LR +GCGS +L++
Sbjct: 368 NIYSHGVRLFLRYLGYGCGSDGALPYCVLMD 398
>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 6074
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +1
Query: 586 PTRSDTFVSFALGDTNAVNHFILGKHRIDRDRFSRCSLAHFTLSSNGT 729
P S S ++ + V H IL DRD +R S+ ++L + T
Sbjct: 4177 PVFSQKIYSASIDENTTVGHVILRVQATDRDHVNRSSIVIYSLDQSDT 4224
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +1
Query: 586 PTRSDTFVSFALGDTNAVNHFILGKHRIDRDRFSRCSLAHFTLSSNGT 729
P S S ++ + V H IL DRD +R S+ ++L + T
Sbjct: 4614 PVFSQKIYSASIDENTTVGHVILRVQATDRDHVNRSSIVIYSLDQSDT 4661
>SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 322 IMGETSHRCNGFLRQIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLT 483
++GE FLR++ +S C++ N+ F + D L+ F++ + F T
Sbjct: 274 VLGENFQDLARFLRELQISPCLMVLNYPSFFSADIQKLNDALMFFTSRPLLFET 327
>SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -3
Query: 270 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG 121
K R++ +K ++H+ + K ++F+ SKF H T A A G
Sbjct: 317 KDRLLEWKKERQIHSFSSTTLKARIRFVAAMSKFAHTTEDTTAWDEATKG 366
>SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)
Length = 545
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -2
Query: 157 IPDAG*QGCIHGYTQEGSYSRRSCGYHNPSGCCAALSVVREN 32
I D G CIH +T +G Y C + + G REN
Sbjct: 410 ISDDG-ANCIHVFTLDGQYVSNECSWESHEGYTHIAVTAREN 450
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 387 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCC 280
++STE++ + + G F +G+V ND + CC
Sbjct: 3492 HSSTEFNSTLRGGIKSGKFKDFGKVRNDVDCVNRCC 3527
>SB_5912| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-08)
Length = 337
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +1
Query: 331 ETSHRCNGFLRQIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 495
ETS R FLRQ+ ++ C + FA++ + T + LV FS L+ SY
Sbjct: 9 ETSLRYVSFLRQVYIANCALNAIFAVIAI-----TGNLLVLFSIWKCRLLSEPSY 58
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,012,657
Number of Sequences: 59808
Number of extensions: 540613
Number of successful extensions: 1136
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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