Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_M02
         (779 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   266   8e-72
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   266   8e-72
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...   260   6e-70
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ...    29   3.5  
At3g60400.1 68416.m06755 mitochondrial transcription termination...    29   3.5  
At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21) ...    29   4.6  
At5g22400.1 68418.m02613 rac GTPase activating protein, putative...    28   8.0  
At5g11270.1 68418.m01316 expressed protein                             28   8.0  

>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  266 bits (653), Expect = 8e-72
 Identities = 127/220 (57%), Positives = 156/220 (70%)
 Frame = -3

Query: 768 QKKAHIMESXXXGGTIXGQSEMGQRTSGEPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSR 589
           QKKAH+ME    GGTI  + +       + IP+++VF +DEMID I            +R
Sbjct: 176 QKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTR 235

Query: 588 WHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 409
           W   +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKKIYR+G     K
Sbjct: 236 WGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG-----K 290

Query: 408 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 229
            G    + A TEYD +EK +TPMGGFPHYG V +D++MIKGCC+GPKKR++TLR+SL   
Sbjct: 291 VG-TEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQ 349

Query: 228 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 109
           T R ALE+I LKFIDT+S FGHGRFQT  +K  F   + K
Sbjct: 350 TSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVTK 389


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  266 bits (653), Expect = 8e-72
 Identities = 127/220 (57%), Positives = 156/220 (70%)
 Frame = -3

Query: 768 QKKAHIMESXXXGGTIXGQSEMGQRTSGEPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSR 589
           QKKAH+ME    GGTI  + +       + IP+++VF +DEMID I            +R
Sbjct: 176 QKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTR 235

Query: 588 WHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 409
           W   +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKKIYR+G     K
Sbjct: 236 WGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG-----K 290

Query: 408 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 229
            G    + A TEYD +EK +TPMGGFPHYG V +D++MIKGCC+GPKKR++TLR+SL   
Sbjct: 291 VG-TEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQ 349

Query: 228 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 109
           T R ALE+I LKFIDT+S FGHGRFQT  +K  F   + K
Sbjct: 350 TSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVTK 389


>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score =  260 bits (638), Expect = 6e-70
 Identities = 125/220 (56%), Positives = 156/220 (70%), Gaps = 1/220 (0%)
 Frame = -3

Query: 768 QKKAHIMESXXXGGTIXGQSEMGQRTSGEPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSR 589
           QKKAH+ E    GG I  + +       + +PVD++F +DEMID I            +R
Sbjct: 176 QKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTR 235

Query: 588 WHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 409
           W   +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+YR+G     K
Sbjct: 236 WGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVG-----K 290

Query: 408 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 229
            G+   ++A TEYD +EK ITPMGGFPHYG V  D++MIKGCC+GPKKR++TLR++L   
Sbjct: 291 VGQE-THSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQ 349

Query: 228 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG-TLK 112
           T R A+E+I LKFID +S  GHGRFQT  +KA F G T+K
Sbjct: 350 TSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGRTIK 389


>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 541

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
 Frame = -3

Query: 351 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRK---SLRVHTKRAALEKINLKFIDT 181
           I P+   P Y  V  DF + KGC   P+K+   L     SLR H     ++K        
Sbjct: 286 ILPINDDPCYKCVECDFCLHKGCASLPRKKAHFLHNHKISLRAHKDDVYVDKCG-----A 340

Query: 180 SSKFGHGRFQTPADKAAFMGTLKKD 106
              + +G      DK++  G +K D
Sbjct: 341 CKTYSNGFKYECHDKSSCRGNIKYD 365


>At3g60400.1 68416.m06755 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 558

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -3

Query: 471 YHHRTEMNKKIYRIGQGIHKKDGK--VIKNNASTEYDLSEKSITPMGGFPHYG 319
           Y     MNK  Y    G+ K+D    +++N A   +DL +  I+  G   H+G
Sbjct: 262 YSEEALMNKAGYFCRFGVSKEDAALLILRNPAIMNFDLEKPVISVTGMLKHFG 314


>At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21)
           identical to ubiquitin-specific protease 21 GI:11993482
           [Arabidopsis thaliana]
          Length = 732

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 647 SSWANTESTGIGSPDVLWPISLC 715
           SS A  +S G+  PDV WP S C
Sbjct: 508 SSKACNDSVGVSIPDVKWPDSCC 530


>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 1 [Lotus
           japonicus] GI:3695059; contains Pfam profile PF00620:
           RhoGAP domain
          Length = 466

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 203 STSNSLTPRPSSVMVDSRRRLTRLHSWVHSRR 108
           S+S+S +P PSS+   SR   T L S  H+RR
Sbjct: 17  SSSSSSSPSPSSLSYASRSNATLLISSDHNRR 48


>At5g11270.1 68418.m01316 expressed protein 
          Length = 354

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 699 QRTSGEPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTH-KGLRKV 538
           + +S +P PV+S+ A+D +++               RW  +K  +K H + L KV
Sbjct: 250 ENSSPDPSPVESLSAEDVVVEPKEKVKDEAVHVMQQRWSAQKRVKKAHIETLEKV 304


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,326,344
Number of Sequences: 28952
Number of extensions: 367413
Number of successful extensions: 929
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)