Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_M01
         (1387 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   1.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   1.8  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   5.4  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 404 GGGGGGGXXXNXFXGGP 454
           GGGGG G   N   GGP
Sbjct: 524 GGGGGSGSGNNQPPGGP 540


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -1

Query: 421 PPPPPPPK 398
           PPPPPPP+
Sbjct: 731 PPPPPPPR 738



 Score = 24.2 bits (50), Expect = 2.3
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 423 PPPPPPPQ 400
           PPPPPPP+
Sbjct: 731 PPPPPPPR 738


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/35 (28%), Positives = 12/35 (34%)
 Frame = -1

Query: 502 PXXKXAPXLKXXPPXXGXPXKXIXXXPPPPPPPPK 398
           P  +  P  K   P            PP P PPP+
Sbjct: 72  PPKREIPSPKRSSPILAEKVSVSPTTPPTPSPPPE 106


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,925
Number of Sequences: 336
Number of extensions: 2720
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 41309922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)