Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_M01
         (1387 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.017
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.16 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   1.5  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   1.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   2.0  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   4.6  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   6.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   6.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   6.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   6.9  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    23   7.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.5 bits (78), Expect = 0.017
 Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
 Frame = -1

Query: 541 PPP--LFPXXXGGGPPXXKXAPXLKXXPPXXGXPXKXIXXXPPPPPPPP 401
           PPP  + P       P    AP +   PP    P       PPPPPPPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 30.7 bits (66), Expect = 0.50
 Identities = 18/64 (28%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
 Frame = -1

Query: 505 PPXXKXAPXLKXXPPXXGXPXKXIXXXPPPPPPPPKXXXXXKKXXXPPXFKXXPXG-KFX 329
           PP            P    P   I   PPPPPPPP           PP       G ++ 
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYY 793

Query: 328 XPPP 317
            P P
Sbjct: 794 APAP 797



 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/48 (31%), Positives = 15/48 (31%)
 Frame = -2

Query: 420 PPPPPPQKXXXXXKXXXXPPXLKXPXXGNFXXPPXXKXXXRGGGGXPP 277
           PPPPPP            P     P  G    PP       G G  PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGG-PPPPPPPPGVAGAGPPPP 778


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -2

Query: 468 PPPXXGPPKKXXXXXPPPPPPP 403
           PPP   PP       PPPPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 28.3 bits (60), Expect = 2.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 424 PPPPPPPPKXXXXXKKXXXPP 362
           PPPPPPPP      +    PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/48 (31%), Positives = 18/48 (37%)
 Frame = -1

Query: 421 PPPPPPPKXXXXXKKXXXPPXFKXXPXGKFXXPPPXKKXXKGGGGXPP 278
           PPPPPPP+                 P G+   PPP  +     G  PP
Sbjct: 337 PPPPPPPRSNAAGS-------IPLPPQGRSAPPPPPPRSAPSTGRQPP 377



 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/43 (32%), Positives = 15/43 (34%)
 Frame = -1

Query: 421 PPPPPPPKXXXXXKKXXXPPXFKXXPXGKFXXPPPXKKXXKGG 293
           PPPPPPP      K    PP            PPP  +    G
Sbjct: 311 PPPPPPPSRRNRGK----PPIGNGSSNSSLPPPPPPPRSNAAG 349


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
 Frame = -1

Query: 502 PXXKXAPXLKXXPPXXGXPXKXIXXX--PPPPPPPP 401
           P    +P     PP    P   +     PPPPPPPP
Sbjct: 161 PNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196



 Score = 28.3 bits (60), Expect = 2.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 465 PPXXGPPKKXXXXXPPPPPPP 403
           PP   P +      PPPPPPP
Sbjct: 224 PPTYTPKQADPLPAPPPPPPP 244


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 424  PPPPPPPP 401
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102



 Score = 24.6 bits (51), Expect(2) = 1.6
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -1

Query: 475  KXXPPXXGXPXKXIXXXPPPPPPP 404
            K   P      K     PPPPPPP
Sbjct: 1079 KPSAPVANNVSKPSAVPPPPPPPP 1102



 Score = 22.6 bits (46), Expect(2) = 1.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 418  PPPPPPKXXXXXKK 377
            PPPPPP      KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 16/46 (34%), Positives = 18/46 (39%)
 Frame = -1

Query: 538  PPLFPXXXGGGPPXXKXAPXLKXXPPXXGXPXKXIXXXPPPPPPPP 401
            PP+ P    G PP  K A  +   PP    P         PP PPP
Sbjct: 1169 PPV-PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 424 PPPPPPPPKXXXXXKKXXXP 365
           PPPPPPPP      K    P
Sbjct: 306 PPPPPPPPPSNDFWKDSNEP 325


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 436 IXXXPPPPPPPPK 398
           I   PPPPPPPP+
Sbjct: 366 ISYSPPPPPPPPE 378


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 468  PPPXXGPPKKXXXXXPPPPPPP 403
            PPP   PP        PPPP P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLP 1736


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = +2

Query: 404 GGGGGGGXXXNXFXGGPXXGGGXF*XRGXFXVXGPPPXXXGKKGGG 541
           G  GGG        GGP  G G F   G F   G      G  GGG
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/46 (30%), Positives = 17/46 (36%)
 Frame = -1

Query: 538 PPLFPXXXGGGPPXXKXAPXLKXXPPXXGXPXKXIXXXPPPPPPPP 401
           P   P      PP  + A  +K  P     P   +   PP  PPPP
Sbjct: 161 PSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP-SAVPPMPPKVPPPP 205


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 424 PPPPPPPP 401
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 8.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 424 PPPPPPPP 401
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953



 Score = 23.8 bits (49), Expect(2) = 6.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 436 IXXXPPPPPPPP 401
           I   P PPPPPP
Sbjct: 901 IITHPTPPPPPP 912



 Score = 21.0 bits (42), Expect(2) = 6.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 424 PPPPPPPPK 398
           PPPPP P K
Sbjct: 908 PPPPPLPVK 916


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 23.0 bits (47), Expect(2) = 7.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 424 PPPPPPPP 401
           PPPPPP P
Sbjct: 356 PPPPPPMP 363



 Score = 21.8 bits (44), Expect(2) = 7.4
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -1

Query: 448 PXKXIXXXPPPPPPP 404
           P   +    PPPPPP
Sbjct: 347 PTPQVQGSRPPPPPP 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,269,148
Number of Sequences: 5004
Number of extensions: 29844
Number of successful extensions: 317
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 767050708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)