Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_M01
         (1387 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.51 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   3.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.51
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 424  PPPPPPPP 401
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 424  PPPPPPPPK 398
            P PPPPPP+
Sbjct: 1857 PEPPPPPPR 1865


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 3.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 1387 PXRPXPPPPP 1358
            P +P PPPPP
Sbjct: 338  PPKPAPPPPP 347



 Score = 23.4 bits (48), Expect = 4.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 424 PPPPPPPP 401
           P PPPPPP
Sbjct: 341 PAPPPPPP 348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
 Frame = -1

Query: 508 GPPXXKXAPXLKXXPPXXGXPXKXIXXXPP--PPPPPP 401
           G P  + +P      P  G P       PP  PP  PP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,211
Number of Sequences: 438
Number of extensions: 6496
Number of successful extensions: 31
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 48145263
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)