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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_L21
         (867 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1573 - 38329476-38329591,38330535-38330871                       32   0.68 
01_06_0581 - 30386018-30386440                                         29   4.8  

>01_06_1573 - 38329476-38329591,38330535-38330871
          Length = 150

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 21/60 (35%), Positives = 23/60 (38%)
 Frame = +1

Query: 496 LKPPLVXV*WRGGKXXPREXXKPGAXXGGXXLPGRQAXCARGRVSGKEXWEXCHAXXPPL 675
           L  PL+ V W GG   P +         G    G  A   R R  G E W  CHA  P L
Sbjct: 26  LLAPLLTVMWFGGLLVPWKQQSGAEALLGE---GDAAWTTRARQHGLEVWMRCHAQKPKL 82


>01_06_0581 - 30386018-30386440
          Length = 140

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 271 SGVRSQVLERLEMRLRSGGGGARRQ 345
           SG+  +V +R+E   R GGGG RR+
Sbjct: 31  SGIEVKVRKRVEKEARMGGGGRRRR 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,762,144
Number of Sequences: 37544
Number of extensions: 244581
Number of successful extensions: 800
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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