Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_L19
         (813 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41539| Best HMM Match : PUD (HMM E-Value=0.42)                      42   8e-04
SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_33854| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_21688| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_10949| Best HMM Match : WD40 (HMM E-Value=3.1e-10)                  29   3.4  
SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_54574| Best HMM Match : WD40 (HMM E-Value=0)                        28   7.8  

>SB_41539| Best HMM Match : PUD (HMM E-Value=0.42)
          Length = 1582

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = -3

Query: 133 GHEDGSVRFWDVTGVAMTPLYKYTTAQLF 47
           GHEDGSV+FWDV+ V M  +Y  +T+++F
Sbjct: 727 GHEDGSVQFWDVSQVEMQLMYTLSTSKMF 755



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/44 (43%), Positives = 19/44 (43%)
 Frame = -1

Query: 603 PRASYSRXVHXLQCSRGEKHVAFDFTSRVIDLFTTTPVPPDGAP 472
           PRASY               V FDFTSRVID F T   P    P
Sbjct: 663 PRASYGDKNCISLVQGSTTQVVFDFTSRVID-FITVSHPDSNEP 705


>SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 237 GQQQXGESIXRRVRGRYPVGWWRRRS*P 154
           G++   E    R RGR P  WWRRR  P
Sbjct: 67  GEEADHEHQEERPRGRRPPPWWRRRRGP 94


>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1649

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 178 VVETAELTDRQVLLTGHEDGSVRFWDV-TGVAMTPLYKYT 62
           ++  A   D + ++TG  DGS+R WD  TG  +  L  +T
Sbjct: 709 ILGIAVTPDTKKIITGGADGSIRVWDYETGKELNKLLDHT 748


>SB_33854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 172 ETAELTDRQVLLTGHEDGSVRFWDVTGVAMTPLYKYTT 59
           E A LT R  L +G E G+V  W  +    TP+  Y+T
Sbjct: 136 ENATLTWRVTLNSGEEVGAVTIWQRSVAGGTPVQMYST 173


>SB_21688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1078

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 154 DRQVLLTGHEDGSVRFW-DVTGVAMTPLYKYTTAQLFS 44
           D  +LLTG +DGSVR W D  GV  +P+   T  Q  S
Sbjct: 885 DLTLLLTGTDDGSVRVWRDYDGVE-SPVEVVTAWQALS 921


>SB_10949| Best HMM Match : WD40 (HMM E-Value=3.1e-10)
          Length = 193

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/35 (51%), Positives = 20/35 (57%)
 Frame = -3

Query: 154 DRQVLLTGHEDGSVRFWDVTGVAMTPLYKYTTAQL 50
           DR VL T H DG VR WD+     TP+  Y TA L
Sbjct: 51  DRNVLATSH-DGDVRIWDLR-KGNTPVV-YITAHL 82


>SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1228

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 142 LLTGHEDGSVRFWDVTGVAMTPLYKYTTAQ 53
           L++ H DG +RFW ++G  +T +   T  Q
Sbjct: 755 LVSAHHDGYLRFWTLSGRLLTEIRAVTRRQ 784


>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 1050

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 178  VVETAELTDRQVLLTGHEDGSVRFWD-VTGVAMTPLYKYTT 59
            VV +   +   ++ TG +DG VR WD V+G  +T   K  T
Sbjct: 971  VVRSISFSPDNMICTGCDDGIVRIWDSVSGKEVTSCKKNET 1011


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,890,722
Number of Sequences: 59808
Number of extensions: 312412
Number of successful extensions: 781
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)