Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_L19
(813 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g05570.1 68418.m00605 transducin family protein / WD-40 repea... 38 0.008
At4g11270.1 68417.m01823 transducin family protein / WD-40 repea... 31 0.91
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 30 2.1
At4g01860.2 68417.m00244 transducin family protein / WD-40 repea... 29 2.8
At4g01860.1 68417.m00243 transducin family protein / WD-40 repea... 29 2.8
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 29 3.7
At3g06880.1 68416.m00817 transducin family protein / WD-40 repea... 29 3.7
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 29 3.7
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 29 3.7
At2g26490.1 68415.m03178 transducin family protein / WD-40 repea... 29 3.7
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 29 4.9
At1g03110.1 68414.m00288 transducin family protein / WD-40 repea... 29 4.9
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 28 6.4
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 28 6.4
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 28 8.5
At4g35560.1 68417.m05053 expressed protein 28 8.5
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 28 8.5
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 28 8.5
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 28 8.5
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 28 8.5
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 28 8.5
At1g49450.1 68414.m05543 transducin family protein / WD-40 repea... 28 8.5
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 28 8.5
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 28 8.5
>At5g05570.1 68418.m00605 transducin family protein / WD-40 repeat
family protein similar to unknown protein (pir||T04661);
contains Pfam PF00400: WD domain, G-beta repeat (4
copies, 2 weak)|8683726|gb|AV524198.1|AV524198
Length = 1124
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -3
Query: 229 TXRRINXSESPWPISGGVVETAE-LTDRQVLLTGHEDGSVRFWDVTGVAMTPLY 71
T R + + WP++GGV + ++ + G++DGS+R WD T ++ +Y
Sbjct: 464 TPRTPSGESAQWPLTGGVPSHVDDYKLERLYMAGYQDGSMRIWDATYPCLSLIY 517
>At4g11270.1 68417.m01823 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to TGF-beta resistance-associated protein TRAG
(GI:15624071) {Mus musculus}; similar to
beta-transducin repeats containing protein - Homo
sapiens,PID:e1284220; 3' EST no_NP:TC8031
Length = 1446
Score = 31.1 bits (67), Expect = 0.91
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 193 PISGGVVETAELTDRQVLLTGHEDGSVRFWDVT 95
P S V TA LT+ L TG DGS+ +W ++
Sbjct: 14 PPSHRVTATASLTNPPTLYTGGSDGSIIWWSIS 46
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 187 SGGVVETAELTDRQVLLTGHEDGSVRFW 104
+ G+V+ +T + TGH+DG +R W
Sbjct: 175 TSGLVKAIVITGDNRIFTGHQDGKIRVW 202
>At4g01860.2 68417.m00244 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -3
Query: 157 TDRQVLLTGHEDGSVRFWDVT 95
+D +L++G DGS+ FWDVT
Sbjct: 1032 SDVYLLISGATDGSIGFWDVT 1052
>At4g01860.1 68417.m00243 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -3
Query: 157 TDRQVLLTGHEDGSVRFWDVT 95
+D +L++G DGS+ FWDVT
Sbjct: 1032 SDVYLLISGATDGSIGFWDVT 1052
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 157 TDRQVLLTGHEDGSVRFWDVTG 92
+ R +L+T +DG+V WD TG
Sbjct: 189 SSRHLLVTAGDDGTVHLWDTTG 210
>At3g06880.1 68416.m00817 transducin family protein / WD-40 repeat
family protein similar to PAK/PLC-interacting protein 1
(GI:4211689) {Homo sapiens}
Length = 1115
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 187 SGGVVETAELTDRQVLLTGHEDGSVRFWDVTGVAMTPLY 71
SG TA + + +L +G DGS+R W+V T L+
Sbjct: 851 SGSGAVTALIYHKGLLFSGFSDGSIRVWNVNKKIATLLW 889
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 154 DRQVLLTGHEDGSVRFWDVTGVAM 83
D+ L++G +DG V++WDV G +
Sbjct: 147 DKLHLVSGGDDGVVKYWDVAGATV 170
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 184 GGVVETAELTDRQVLLTGHEDGSVRFWD 101
G V + A + + LTG +DG V+ WD
Sbjct: 2376 GSVTKIATIPRTSLFLTGSKDGEVKLWD 2403
>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
related to En/Spm transposon family of maize
Length = 465
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -3
Query: 202 SPWPISGGVVETAELTDRQVLLTGHEDGSVRFWDVT 95
S + + G+V+ ++ ++ TGH+DG +R W V+
Sbjct: 128 SAFKCNSGLVKAIVISGEKIF-TGHQDGKIRVWKVS 162
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 151 RQVLLTGHEDGSVRFWDV 98
++ +LT EDGS+R WDV
Sbjct: 291 KETVLTSSEDGSLRIWDV 308
>At1g03110.1 68414.m00288 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat domain 4 protein (GI:9955698) [Mus
musculus]
Length = 427
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -3
Query: 175 VETAELTDRQVLLTGHEDGSVRFWDVTGVAMTPLYKYTT 59
V T ELT + L++G D +VR WD+T ++ + +T
Sbjct: 212 VSTPELT-QGYLMSGSGDSTVRLWDITSGSLLDTCEVST 249
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 178 VVETAELTDRQVLLTGHEDGSVRFWDV-TGVAMTPL 74
V+ A D + + +G EDG++ WD+ T +TPL
Sbjct: 544 VLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPL 579
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 28.3 bits (60), Expect = 6.4
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -3
Query: 187 SGGVVETAELTDRQVLLTGHEDGSVRFW 104
+ G+V+ ++ + TGH+DG +R W
Sbjct: 61 NSGLVKAIVISREAKVFTGHQDGKIRVW 88
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -3
Query: 154 DRQVLLTGHEDGSVRFWDV-TGVAMTPLYKYTTA 56
D + +GH DG++R WD+ TG ++ + +++A
Sbjct: 368 DGLTVFSGHMDGNLRLWDIQTGKLLSEVAGHSSA 401
>At4g35560.1 68417.m05053 expressed protein
Length = 917
Score = 27.9 bits (59), Expect = 8.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 151 RQVLLTGHEDGSVRFWDVT 95
+ V +TGH DG++ WD+T
Sbjct: 309 KNVYITGHCDGTISVWDMT 327
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 27.9 bits (59), Expect = 8.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 145 VLLTGHEDGSVRFWDVT 95
+++TG EDG+VR W T
Sbjct: 243 IIITGSEDGTVRIWHAT 259
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 27.9 bits (59), Expect = 8.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 145 VLLTGHEDGSVRFWDVT 95
+++TG EDG+VR W T
Sbjct: 243 IIITGSEDGTVRIWHAT 259
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 27.9 bits (59), Expect = 8.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 145 VLLTGHEDGSVRFWDVT 95
+++TG EDG+VR W T
Sbjct: 243 IIITGSEDGTVRIWHAT 259
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 27.9 bits (59), Expect = 8.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 145 VLLTGHEDGSVRFWDVT 95
+++TG EDG+VR W T
Sbjct: 243 IIITGSEDGTVRIWHAT 259
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 27.9 bits (59), Expect = 8.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 145 VLLTGHEDGSVRFWDVT 95
+++TG EDG+VR W T
Sbjct: 243 IIITGSEDGTVRIWHAT 259
>At1g49450.1 68414.m05543 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 471
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 187 SGGVVETAELTDRQVLLTGHEDGSVRFW 104
+ G V+ +T + TGH+DG +R W
Sbjct: 171 TSGFVKAIVVTRDNRVFTGHQDGKIRVW 198
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3
Query: 145 VLLTGHEDGSVRFWDV 98
VL TG DG++RFWD+
Sbjct: 205 VLYTGGCDGAIRFWDI 220
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3
Query: 145 VLLTGHEDGSVRFWDV 98
VL TG DG++RFWD+
Sbjct: 205 VLYTGGCDGAIRFWDI 220
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,069,490
Number of Sequences: 28952
Number of extensions: 203016
Number of successful extensions: 766
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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