Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_L18
         (821 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0KYI5 Cluster: TonB-dependent receptor; n=11; Shewanel...    35   2.8  
UniRef50_Q9AAF1 Cluster: Putative uncharacterized protein; n=1; ...    33   6.5  

>UniRef50_A0KYI5 Cluster: TonB-dependent receptor; n=11;
           Shewanella|Rep: TonB-dependent receptor - Shewanella sp.
           (strain ANA-3)
          Length = 937

 Score = 34.7 bits (76), Expect = 2.8
 Identities = 20/53 (37%), Positives = 24/53 (45%)
 Frame = -1

Query: 785 SVLGGTNRDEMDFREWTKGYTVXSSQERGXLTAXSSPVQSQXPWRGGSSXGNV 627
           SV GG N  E D R++T   T   S E+G L    S V  Q  W G     +V
Sbjct: 179 SVYGGENLSEGDGRQYTADLTFGVSGEKGGLLFNMSHVTQQPIWAGDRDISSV 231


>UniRef50_Q9AAF1 Cluster: Putative uncharacterized protein; n=1;
           Caulobacter vibrioides|Rep: Putative uncharacterized
           protein - Caulobacter crescentus (Caulobacter
           vibrioides)
          Length = 149

 Score = 33.5 bits (73), Expect = 6.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 652 RHGSWLCTGLDXAVXIPRS*LEXTVYPFVHSRK 750
           R GSW+CTGLD  + +P        YP    RK
Sbjct: 105 RGGSWICTGLDATIIVPGDRTGMGRYPVTEVRK 137


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 480,869,158
Number of Sequences: 1657284
Number of extensions: 6122911
Number of successful extensions: 16799
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16798
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 70914189703
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)