Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_L18
         (821 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52112| Best HMM Match : PH (HMM E-Value=2.4e-14)                    29   3.4  
SB_39888| Best HMM Match : PH (HMM E-Value=3.5e-22)                    29   4.6  

>SB_52112| Best HMM Match : PH (HMM E-Value=2.4e-14)
          Length = 356

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -1

Query: 764 RDEMDFREWTKGYTVXSSQERGXLTAXSSPVQSQXPWRGGS 642
           +D  + ++W K  TV +S  +  +T  S+P+  +  WR G+
Sbjct: 73  KDNQELKDWVKALTVAASGGKYTMTQESAPLTPEG-WRTGT 112


>SB_39888| Best HMM Match : PH (HMM E-Value=3.5e-22)
          Length = 1067

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -1

Query: 764 RDEMDFREWTKGYTVXSSQERGXLTAXSSPVQSQXPWRGGS 642
           +D  + ++W K  TV +S  +  +T  S+P+  +  WR G+
Sbjct: 557 KDNQELKDWVKALTVAASGGKYTMTHESAPLTPEG-WRTGT 596


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,020,744
Number of Sequences: 59808
Number of extensions: 184808
Number of successful extensions: 525
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)