Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_L17
         (816 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39494| Best HMM Match : Cm_res_leader (HMM E-Value=2.8)             43   3e-04
SB_1139| Best HMM Match : wnt (HMM E-Value=0)                          31   1.5  
SB_7139| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.5  
SB_42486| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   6.0  
SB_27959| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_39494| Best HMM Match : Cm_res_leader (HMM E-Value=2.8)
          Length = 159

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 19/28 (67%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
 Frame = -1

Query: 357 DAFRCRPPNTSRPPSLHVDDFTAL--HH 280
           D FR R  NTSRPPS+HVDDF A+  HH
Sbjct: 84  DLFRSRKQNTSRPPSMHVDDFMAMEQHH 111


>SB_1139| Best HMM Match : wnt (HMM E-Value=0)
          Length = 500

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 180 GRGAWEVGAPHFGHYPPAPQYMLGGACRGPRGPRHRSFIR 61
           GRG W+ G    G +P         ACR     RH +F+R
Sbjct: 29  GRGGWDPGNEDGGLFPSMQAARAQEACRSRAVSRHSAFVR 68


>SB_7139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 753

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 277 LHQPQQQGRAAWCGPRALRVCGAGARALPT 188
           LHQP+    +A   PR  RVC     ALPT
Sbjct: 389 LHQPRSHAGSAPASPRPPRVCTGPGHALPT 418


>SB_42486| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1554

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +3

Query: 504 TRRPRTGSCSPLP*CRTVLIHD 569
           T+RP+TGS S +P  +TVLI D
Sbjct: 162 TKRPKTGSESDVPSSQTVLIKD 183


>SB_27959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 373

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
 Frame = -1

Query: 168 WEVGAPHFGHYPPAPQYMLGGA---CRGPRGPRHR 73
           W V  PHF    PA  + L G    CR P G + R
Sbjct: 309 WNVTTPHFHLMSPATYHELRGGHNYCRNPGGKKQR 343


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,458,016
Number of Sequences: 59808
Number of extensions: 365780
Number of successful extensions: 1120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)