Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_L17
         (816 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05680.1 68416.m00634 expressed protein                             44   9e-05
At1g51580.1 68414.m05806 KH domain-containing protein                  29   2.8  
At4g38710.1 68417.m05483 glycine-rich protein cylicin II - bovin...    28   8.5  

>At3g05680.1 68416.m00634 expressed protein
          Length = 2057

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 18/23 (78%), Positives = 20/23 (86%)
 Frame = -1

Query: 357  DAFRCRPPNTSRPPSLHVDDFTA 289
            DAFR R PNTSRPPS+HVDD+ A
Sbjct: 1476 DAFRQRKPNTSRPPSMHVDDYVA 1498


>At1g51580.1 68414.m05806 KH domain-containing protein
          Length = 621

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = -1

Query: 735 PPXVPEAXPAXPDRXGGPV--XHAQXCTDPG 649
           PP  P   PA PDR   PV   H + C  PG
Sbjct: 462 PPFGPRQYPASPDRYHSPVGPFHERHCHGPG 492


>At4g38710.1 68417.m05483 glycine-rich protein cylicin II - bovine,
           PIR2:I46014
          Length = 452

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 686 AQFXTRNXAQTRGSPPNERLTTG*LVEHPLGQR 588
           A+F T   A+ + +P  ERLT   LV  P G R
Sbjct: 67  AEFATYGTAKAKPAPQTERLTQAELVALPTGPR 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,949,330
Number of Sequences: 28952
Number of extensions: 244405
Number of successful extensions: 674
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)