BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_T7_L16 (828 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 29 4.5 01_06_0581 - 30386018-30386440 29 4.5 >04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626, 1848780-1848887,1849001-1849204,1849294-1849525, 1849602-1849751,1849830-1850007,1850416-1850519, 1850611-1850933,1851274-1851459,1851672-1851899 Length = 1020 Score = 29.1 bits (62), Expect = 4.5 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +1 Query: 589 PSRVPGGASPXKTSGTLPRELPPRQGPW 672 PS+ P G +P + G +PP QGP+ Sbjct: 141 PSQGPFGTAPPPSQGPFAASVPPSQGPF 168 >01_06_0581 - 30386018-30386440 Length = 140 Score = 29.1 bits (62), Expect = 4.5 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +2 Query: 272 SGVRSQVLERLEMRLRSGGGGARRQ 346 SG+ +V +R+E R GGGG RR+ Sbjct: 31 SGIEVKVRKRVEKEARMGGGGRRRR 55 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,184,945 Number of Sequences: 37544 Number of extensions: 261662 Number of successful extensions: 886 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 851 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 885 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2279943096 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -