Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_L14
         (784 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;...    54   3e-06
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary...    52   2e-05
UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S riboso...    49   2e-04
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi...    46   8e-04
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr...    44   0.003
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ...    42   0.013
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella...    37   0.65 
UniRef50_Q8IKJ3 Cluster: Putative uncharacterized protein; n=1; ...    33   8.1  

>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
           n=1; Caenorhabditis elegans|Rep: Putative
           uncharacterized protein rpl-3 - Caenorhabditis elegans
          Length = 353

 Score = 54.4 bits (125), Expect = 3e-06
 Identities = 35/80 (43%), Positives = 43/80 (53%)
 Frame = -1

Query: 361 LXPMGGXPPXXVXXXXDFXXDSRXXXMGP*XXYHXFLESLCVCXXKRAALEKINLKFIDT 182
           + PMGG P   +    D+    R   +GP        +SL +   KR A EKINLK+IDT
Sbjct: 263 ITPMGGFPRYGIVNQ-DYIM-LRGAVLGPKKRLITLRKSL-ITQTKRVAHEKINLKWIDT 319

Query: 181 SSKFGHGRFQTPAXQGCIHG 122
           SSK GHGRFQT A +    G
Sbjct: 320 SSKTGHGRFQTTAEKRAFMG 339


>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
           Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
           (Human)
          Length = 403

 Score = 52.0 bits (119), Expect = 2e-05
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = -1

Query: 226 KRAALEKINLKFIDTSSKFGHGRFQT 149
           KR ALEKI+LKFIDT+SKFGHGRFQT
Sbjct: 356 KRRALEKIDLKFIDTTSKFGHGRFQT 381


>UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S ribosomal
           protein L3 (L4); n=1; Macaca mulatta|Rep: PREDICTED:
           similar to 60S ribosomal protein L3 (L4) - Macaca
           mulatta
          Length = 153

 Score = 48.8 bits (111), Expect = 2e-04
 Identities = 22/26 (84%), Positives = 24/26 (92%)
 Frame = -1

Query: 226 KRAALEKINLKFIDTSSKFGHGRFQT 149
           K  ALEKI+LKFIDT+SKFGHGRFQT
Sbjct: 106 KWRALEKIDLKFIDTTSKFGHGRFQT 131


>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
           Bilateria|Rep: 60S ribosomal protein L3-like - Homo
           sapiens (Human)
          Length = 407

 Score = 46.4 bits (105), Expect = 8e-04
 Identities = 20/25 (80%), Positives = 22/25 (88%)
 Frame = -1

Query: 223 RAALEKINLKFIDTSSKFGHGRFQT 149
           R A+E I LKFIDT+SKFGHGRFQT
Sbjct: 357 RQAVENIELKFIDTTSKFGHGRFQT 381


>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
           Trypanosomatidae|Rep: Ribosomal protein L3, putative -
           Trypanosoma brucei
          Length = 480

 Score = 44.4 bits (100), Expect = 0.003
 Identities = 20/25 (80%), Positives = 20/25 (80%)
 Frame = -1

Query: 223 RAALEKINLKFIDTSSKFGHGRFQT 149
           R   EKI LKFIDTSSK GHGRFQT
Sbjct: 406 RKLTEKITLKFIDTSSKIGHGRFQT 430


>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
           RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
           60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
           B) (TARBP-B). - Bos Taurus
          Length = 340

 Score = 42.3 bits (95), Expect = 0.013
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = -1

Query: 226 KRAALEKINLKFIDTSSKFGHGRFQ 152
           K+  L+K+N KFIDT+SKFGHG FQ
Sbjct: 301 KQQTLQKVNFKFIDTTSKFGHGCFQ 325


>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
           natans|Rep: Ribosomal protein L3 - Bigelowiella natans
           (Pedinomonas minutissima) (Chlorarachnion sp.(strain
           CCMP 621))
          Length = 370

 Score = 36.7 bits (81), Expect = 0.65
 Identities = 15/23 (65%), Positives = 20/23 (86%)
 Frame = -1

Query: 211 EKINLKFIDTSSKFGHGRFQTPA 143
           EKI LK++DTSSK GHGR+++ A
Sbjct: 337 EKIILKYVDTSSKRGHGRYESSA 359


>UniRef50_Q8IKJ3 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 93

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 1   FFFFFALSNVYFHGRHLRLRSSRWGCGSRSFFA 99
           FFFFF + N YF+   L L  ++ GCG    FA
Sbjct: 20  FFFFFVVYNDYFNEPELPLDENKKGCGQFKCFA 52


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 442,966,342
Number of Sequences: 1657284
Number of extensions: 5827129
Number of successful extensions: 8269
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8260
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66262109095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)