Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_L14
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    50   5e-07
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    50   5e-07
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   2.3  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 49.6 bits (113), Expect = 5e-07
 Identities = 21/27 (77%), Positives = 25/27 (92%)
 Frame = -1

Query: 223 RAALEKINLKFIDTSSKFGHGRFQTPA 143
           R ALE ++LK+IDT+SKFGHGRFQTPA
Sbjct: 348 RKALEPVSLKWIDTASKFGHGRFQTPA 374


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 49.6 bits (113), Expect = 5e-07
 Identities = 21/27 (77%), Positives = 25/27 (92%)
 Frame = -1

Query: 223 RAALEKINLKFIDTSSKFGHGRFQTPA 143
           R ALE ++LK+IDT+SKFGHGRFQTPA
Sbjct: 348 RKALEPVSLKWIDTASKFGHGRFQTPA 374


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 151 TPAXQGCIHGYTQEGSYSRRSCGYHNPS 68
           T   +   HGY+   +  R+ C YHNPS
Sbjct: 299 TSLFRASFHGYSMY-ALERKMCNYHNPS 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,727,242
Number of Sequences: 5004
Number of extensions: 21575
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)