Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_L14
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...    52   7e-07
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...    52   7e-07
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082...    28   9.6  
04_01_0376 - 4929447-4929731                                           28   9.6  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 33/71 (46%), Positives = 40/71 (56%)
 Frame = -1

Query: 361 LXPMGGXPPXXVXXXXDFXXDSRXXXMGP*XXYHXFLESLCVCXXKRAALEKINLKFIDT 182
           + PMGG P   V    D+    +   +GP        +SL +    R ALE+I LKFIDT
Sbjct: 309 ITPMGGFPHYGVVKG-DYLM-IKGCCVGPKKRVVTLRQSL-LKQTSRLALEEIKLKFIDT 365

Query: 181 SSKFGHGRFQT 149
           SSKFGHGRFQT
Sbjct: 366 SSKFGHGRFQT 376


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 33/71 (46%), Positives = 40/71 (56%)
 Frame = -1

Query: 361 LXPMGGXPPXXVXXXXDFXXDSRXXXMGP*XXYHXFLESLCVCXXKRAALEKINLKFIDT 182
           + PMGG P   V    D+    +   +GP        +SL +    R ALE+I LKFIDT
Sbjct: 309 ITPMGGFPHYGVVKG-DYLM-IKGCCVGPKKRVVTLRQSL-LKQTSRLALEEIKLKFIDT 365

Query: 181 SSKFGHGRFQT 149
           SSKFGHGRFQT
Sbjct: 366 SSKFGHGRFQT 376


>05_03_0496 +
           14706959-14707020,14707173-14707538,14708070-14708209,
           14708319-14708566,14708814-14708946,14709096-14709159,
           14709284-14709380,14709505-14709607,14709702-14709838,
           14710063-14710152,14710240-14710401
          Length = 533

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +1

Query: 1   FFFFFALSNVYFHGRHLRLRSSRWGCGSRSFFANTILLEC 120
           FFFFF   +VY   RH R R  R     R  F ++    C
Sbjct: 103 FFFFFFSGDVYCGHRHFRRRRRRRQWDGRLVFGSSGASAC 142


>04_01_0376 - 4929447-4929731
          Length = 94

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 181 SSKFGHGRFQTPAXQGCIHGYTQEGSYSRRSCGYHNPSGCCAA 53
           +++ G G   +   +G +HG+   G+ + RSC      G C+A
Sbjct: 34  AARSGGGVHASAVRRGAVHGHAWCGARAERSCAAWLQQGRCSA 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,423,522
Number of Sequences: 37544
Number of extensions: 195197
Number of successful extensions: 264
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)