Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_L14
         (784 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)          51   1e-06
SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)                   28   9.8  
SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)                   28   9.8  

>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 24/34 (70%), Positives = 25/34 (73%)
 Frame = -1

Query: 223 RAALEKINLKFIDTSSKFGHGRFQTPAXQGCIHG 122
           R A EKI LKFIDTSSKFGHGRFQ PA +    G
Sbjct: 254 RDAAEKITLKFIDTSSKFGHGRFQHPAEKRAFMG 287


>SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)
          Length = 545

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -1

Query: 133 CIHGYTQEGSYSRRSCGYHNPSGCCAALSVVREN 32
           CIH +T +G Y    C + +  G        REN
Sbjct: 417 CIHVFTLDGQYVSNECSWESHEGYTHIAVTAREN 450


>SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)
          Length = 458

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 25  NVYFHGRHLRLRSSRWGCGSRSFFANTILLE 117
           N+Y HG  L LR   +GCGS       +L++
Sbjct: 368 NIYSHGVRLFLRYLGYGCGSDGALPYCVLMD 398


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,619,954
Number of Sequences: 59808
Number of extensions: 189782
Number of successful extensions: 291
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)