Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_L14
         (784 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...    48   9e-06
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...    48   9e-06
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...    43   3e-04

>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 30/69 (43%), Positives = 37/69 (53%)
 Frame = -1

Query: 355 PMGGXPPXXVXXXXDFXXDSRXXXMGP*XXYHXFLESLCVCXXKRAALEKINLKFIDTSS 176
           PMGG P   +    D     +   +GP        +SL +    R ALE+I LKFIDT+S
Sbjct: 311 PMGGFPHYGIVK--DDYLMIKGCCVGPKKRVVTLRQSL-LTQTSRLALEEIKLKFIDTAS 367

Query: 175 KFGHGRFQT 149
            FGHGRFQT
Sbjct: 368 IFGHGRFQT 376


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 30/69 (43%), Positives = 37/69 (53%)
 Frame = -1

Query: 355 PMGGXPPXXVXXXXDFXXDSRXXXMGP*XXYHXFLESLCVCXXKRAALEKINLKFIDTSS 176
           PMGG P   +    D     +   +GP        +SL +    R ALE+I LKFIDT+S
Sbjct: 311 PMGGFPHYGIVK--DDYLMIKGCCVGPKKRVVTLRQSL-LTQTSRLALEEIKLKFIDTAS 367

Query: 175 KFGHGRFQT 149
            FGHGRFQT
Sbjct: 368 IFGHGRFQT 376


>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 28/82 (34%), Positives = 41/82 (50%)
 Frame = -1

Query: 361 LXPMGGXPPXXVXXXXDFXXDSRXXXMGP*XXYHXFLESLCVCXXKRAALEKINLKFIDT 182
           + PMGG P   +    D+    +   +GP        ++L +    R A+E+I LKFID 
Sbjct: 309 ITPMGGFPHYGIVKE-DYLM-IKGCCVGPKKRVVTLRQTL-LKQTSRLAMEEIKLKFIDA 365

Query: 181 SSKFGHGRFQTPAXQGCIHGYT 116
           +S  GHGRFQT   +   +G T
Sbjct: 366 ASNGGHGRFQTSQEKAKFYGRT 387


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,802,565
Number of Sequences: 28952
Number of extensions: 145610
Number of successful extensions: 246
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)