Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_L12
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    36   0.007
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    35   0.015
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    33   0.036
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    30   0.44 
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   5.4  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   9.5  

>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 412 AAPLV*XPEVWVETKTDEGKSYYYHARSRETTWTRPVE 299
           AAP       W E KT++ + YYY++ +R++ W +P E
Sbjct: 26  AAPSKTVASDWHEVKTEDSRVYYYNSVTRKSVWEKPEE 63



 Score = 34.3 bits (75), Expect = 0.020
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = -1

Query: 382 WVETKTDEGKSYYYHARSRETTWTRPVEGPNCKVITHGEMEILVASGQIP----QISAQG 215
           W E  T +GK Y+Y+  +RE+ W  P E     ++   E +    S +I     + + Q 
Sbjct: 77  WKEYATADGKKYWYNVNTRESVWDIPDE-YKAALVDEPEQQKKALSSKIKSNDNKPAVQS 135

Query: 214 VGMNGPMGQAPLVMP 170
           +  +GP   AP   P
Sbjct: 136 IQRHGPDVAAPSSQP 150


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 34.7 bits (76), Expect = 0.015
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = -1

Query: 562 QQLGTDGSPASQHDVSAALRPPSRHDASRGADGSPS*YDESAPIWRTTWYAAPLV*XPEV 383
           Q+      P S    S +  P S    S   D +P+    S+     + +       P  
Sbjct: 151 QRTSITNDPQSSQSSSVSRNPASSRAGSPTRDNAPAASPASSEPRTFSSFEDQYGRLPPG 210

Query: 382 WVETKTDE-GKSYYYHARSRETTWTRP 305
           W E +TD  G++YY    +R TTW RP
Sbjct: 211 W-ERRTDNLGRTYYVDHNTRSTTWIRP 236



 Score = 29.9 bits (64), Expect = 0.44
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 391 PEVWVETKTDEGKSYYYHARSRETTWTRP 305
           P  W +  T EG+ Y+    +R TTW  P
Sbjct: 291 PPGWEQRYTPEGRPYFVDHNTRTTTWVDP 319


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 33.5 bits (73), Expect = 0.036
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -1

Query: 391 PEVWVETKTDEGKSYYYHARSRETTWTRPVEGPN 290
           P  W       G++YY    +R TTWTRP    N
Sbjct: 239 PPGWERRADSLGRTYYVDHNTRTTTWTRPASSTN 272


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 391 PEVWVETKTDEGKSYYYHARSRETTWTRP 305
           P  W E K   G  YY++A  +++T+ RP
Sbjct: 6   PPGWTEHKAPSGIPYYWNAELKKSTYQRP 34



 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -1

Query: 382 WVETKTDEGKSYYYHARSRETTWTRPVE 299
           WV   T + + ++++ +S E+ W  P+E
Sbjct: 95  WVVVFTKKNRYFFHNLKSHESYWEPPLE 122


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 33  TASPGGISSLSVILPTTDSEALSLSSFPQGGGP 131
           T+S    S+ S+I+PTT S + S+SSF     P
Sbjct: 505 TSSSPYYSNSSIIVPTTVSTSGSVSSFSSSPSP 537


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 351 DLPSSVFVSTHTSGXHTXGAAYQVVL 428
           ++  SVFV+ HTS   T  A Y + L
Sbjct: 293 EMGDSVFVAAHTSAGKTVVAEYAIAL 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,747
Number of Sequences: 5004
Number of extensions: 60293
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)