Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_L12
(802 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31) 47 2e-05
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33) 37 0.022
SB_20896| Best HMM Match : TSP_1 (HMM E-Value=4.8e-28) 33 0.20
SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 33 0.36
SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.36
SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.62
SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_17550| Best HMM Match : WW (HMM E-Value=0.0012) 29 4.4
SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_48507| Best HMM Match : TolA (HMM E-Value=1) 29 5.8
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 5.8
>SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)
Length = 662
Score = 46.8 bits (106), Expect = 2e-05
Identities = 15/28 (53%), Positives = 24/28 (85%)
Frame = -1
Query: 388 EVWVETKTDEGKSYYYHARSRETTWTRP 305
++W+E KT +GK+YYY+AR+RE+ W +P
Sbjct: 85 DIWLEHKTSDGKTYYYNARTRESAWEKP 112
Score = 37.9 bits (84), Expect = 0.009
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = -1
Query: 382 WVETKTDEGKSYYYHARSRETTWTRPVE 299
W E +T +G+ Y+Y++R+ ++TW RP E
Sbjct: 419 WSEHRTSDGRVYFYNSRTMQSTWERPKE 446
>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1913
Score = 37.9 bits (84), Expect = 0.009
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 391 PEVWVETKTDEGKSYYYHARSRETTWTRPVEGPNCK 284
P+ W+E ++ G YY+H S T W RP P K
Sbjct: 1279 PDGWMEVESGTGSKYYWHVSSGTTQWERPQVAPRPK 1314
>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
Length = 693
Score = 36.7 bits (81), Expect = 0.022
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 382 WVETKTDEGKSYYYHARSRETTWTRPVEGPNCKVITHGEME 260
W E K D G+ YY++ ++E+ WT P E K E E
Sbjct: 212 WKEHKADSGRVYYHNTETKESIWTEPKELTELKEKIKAEAE 252
Score = 33.9 bits (74), Expect = 0.15
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 382 WVETKTDEGKSYYYHARSRETTWTRPVE 299
W E K +G++Y+Y+ S+ +TW +P E
Sbjct: 171 WTEHKAPDGRTYFYNNDSKVSTWQKPDE 198
>SB_20896| Best HMM Match : TSP_1 (HMM E-Value=4.8e-28)
Length = 588
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 474 PREASCREGGRRAADTSCWEAGDPSVPNCCRNSVH*VRNGVRPV 605
PR+ R GR DTSC + +P PN N+ R G P+
Sbjct: 203 PRDFYWRHSGRSRIDTSCIQVNEPEDPNSWGNNFLCKRKGKMPI 246
>SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 430
Score = 33.1 bits (72), Expect = 0.27
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 391 PEVWVETKTDEGKSYYYHARSRETTWTRP 305
PE W E + G+++Y +R TTW RP
Sbjct: 185 PEGWEERQDANGRTFYIDHTTRTTTWVRP 213
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 32.7 bits (71), Expect = 0.36
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 59 VISHTAHYRLRGFVFIVLPPGRRPHVLVLRAGQHHAVGH 175
V S+T Y L G +F R+ H+ QHH V H
Sbjct: 878 VKSYTIEYSLDGALFTAFKQNRKTHIFTGNTDQHHIVSH 916
>SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1047
Score = 32.7 bits (71), Expect = 0.36
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -1
Query: 391 PEVWVETKTDEGKSYYYHARSRETTWTRP 305
P W +GK YYYH +R T W P
Sbjct: 849 PPNWKTATDPQGKIYYYHTLTRRTQWDPP 877
>SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 31.9 bits (69), Expect = 0.62
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -1
Query: 427 RTTWYAAPLV*XPEVWVETKTDEGKSYYYHARSRETTWTRP 305
RTT + P P W G++YY +R TTW RP
Sbjct: 405 RTTAWERPQP-LPHGWERRTDSRGRTYYVDHNTRTTTWQRP 444
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -1
Query: 391 PEVWVETKTDEGKSYYYHARSRETTWTRPVEGPN 290
P W + G+ YY SR T W RP P+
Sbjct: 384 PPGWEQRVDPHGRIYYVDHNSRTTAWERPQPLPH 417
>SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1153
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 213 TPCADIWGICPEATSISISPCVMT 284
T C +I GICP TSI+ S C +T
Sbjct: 190 TECREIAGICPGLTSINFSYCNIT 213
>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -1
Query: 199 PMGQAPLVMPNGMMLPGAQHQYMG-PPPWGK 110
P+ P+ P GM PGA + G PPPW K
Sbjct: 362 PLMSTPVQRPPGMRPPGAGNGPGGPPPPWSK 392
>SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/74 (28%), Positives = 28/74 (37%)
Frame = -3
Query: 680 RRLCDFVDAATDPQDLQCADEASSEDGADPVSDLMDRISTTIGDRWVPRLPT*CVRRPSA 501
R+ CDF + D +C ASS + V + + T GD P P P+
Sbjct: 51 RKSCDFCGGSCRDNDKRCPSWASSCNSNQYVKNNCKKTCGTCGDPPPPATPPPPTMPPTP 110
Query: 500 PLPA*CLPGGRWVP 459
P P P G P
Sbjct: 111 PPPQTPAPPGPDTP 124
>SB_17550| Best HMM Match : WW (HMM E-Value=0.0012)
Length = 677
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -1
Query: 391 PEVWV--ETKTDEGKSYYYHARSRETTWTRPVE 299
P W+ E+ + G+ Y++H S T+W P++
Sbjct: 14 PNGWIMKESSSRPGRKYFFHKMSGMTSWKHPLD 46
>SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2028
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 124 PPWGKDDKDKASESVVGSMTDNDEMPPGEAVPWTAAKK 11
P + + D+D A E V G++T + +P G V W KK
Sbjct: 1321 PVYCRTDED-APEGVPGNVTSQETVPTGVKVNWLPVKK 1357
>SB_48507| Best HMM Match : TolA (HMM E-Value=1)
Length = 649
Score = 28.7 bits (61), Expect = 5.8
Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 8/112 (7%)
Frame = -1
Query: 391 PEVWVETKTDEGKSYYYHARSRETTWTRPVEGPNCKVITHGEMEILVASGQIPQISAQGV 212
P +ET T K + R+ E T + P + T +++L+ P A
Sbjct: 509 PTAPIETVTTTIKEH--RLRTEEKTHLKSTTSPGQEPSTTSSVQVLITLITSPDKEASA- 565
Query: 211 GMNGPMGQAPLV------MPNGMM--LPGAQHQYMGPPPWGKDDKDKASESV 80
+N P Q P V P G P QH PPP ++ +A ES+
Sbjct: 566 -LNTPSDQEPTVSTSEENQPTGTPDPTPTPQHPSAKPPPTPHGEEPEAIESL 616
>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1572
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +2
Query: 59 VISHTAHYRLRGFVFIVLPPGRRPHVLVLRAGQHHAVGH 175
V S+T Y L G ++ + H+ QHH V H
Sbjct: 1137 VKSYTIEYSLDGALYTAFKQNGKTHIFTGNTDQHHIVSH 1175
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,499,928
Number of Sequences: 59808
Number of extensions: 545727
Number of successful extensions: 1600
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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