Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_L11
         (809 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683...   156   2e-38
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711...    33   0.27 
02_04_0642 + 24686792-24686913,24687027-24687090,24688282-246884...    30   2.5  
02_01_0269 + 1788788-1789508,1789629-1789658,1790127-1790368,179...    28   7.6  
01_06_1117 - 34633311-34634030,34634434-34634873,34635320-346353...    28   7.6  
01_01_1138 - 9019049-9019159,9019525-9019606,9020059-9020177,902...    28   7.6  

>07_03_0405 -
           17767303-17767665,17767815-17768039,17768115-17768342,
           17768607-17768621,17768622-17768810,17769106-17769213,
           17769917-17770045
          Length = 418

 Score =  156 bits (379), Expect = 2e-38
 Identities = 80/133 (60%), Positives = 88/133 (66%)
 Frame = -3

Query: 807 MVIGSSIXERDEKHSDILWNTAVVIRTPET*SGSIARTTFRESAILTNPTTXMEGNTGHP 628
           MVI S I ERD  H +I+WNTAVVI       G   +            T  MEGNTGHP
Sbjct: 187 MVIVSPILERDVNHGEIVWNTAVVIGNHGNIIGIHRKNHIPRVGDFNESTYYMEGNTGHP 246

Query: 627 VFATRYGKIAVNICFGRHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAI 448
           VF T YGKI VNIC+GRHH LNW+ FG NGAEIVFNPSAT+ GE  SE MW +EARNAAI
Sbjct: 247 VFETAYGKIGVNICYGRHHPLNWLAFGLNGAEIVFNPSATV-GE-LSEPMWPIEARNAAI 304

Query: 447 TNCYFTAAINRVG 409
            N YF  +INRVG
Sbjct: 305 ANSYFVGSINRVG 317



 Score =  110 bits (264), Expect = 1e-24
 Identities = 52/91 (57%), Positives = 64/91 (70%)
 Frame = -1

Query: 404 EEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQIR 225
           E FPN FTS DGKP H D G FYGSS+F  PD    P LSR RDGL+I+ +DLNL RQI+
Sbjct: 319 EVFPNPFTSGDGKPQHADFGHFYGSSHFSAPDASCTPSLSRYRDGLMISDMDLNLCRQIK 378

Query: 224 DRRCYYMTQRLDMYVNSLSKVLELDYKPQVV 132
           D+  + MT R D Y + LS+ L+ D+KPQV+
Sbjct: 379 DKWGFRMTARYDTYASLLSEYLKPDFKPQVI 409


>02_04_0096 +
           19669428-19669525,19670770-19670818,19671041-19671132,
           19671235-19671386,19671478-19671524,19671617-19671650,
           19671769-19671935,19672070-19672166,19672239-19672408
          Length = 301

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
 Frame = -3

Query: 645 GNTGHPVFATRYGKIAVNICFGRHHVLNWMMFGQNGAEIVFNPSATIAGEG-----GSEY 481
           G+TG   F T+Y  I V IC+ +            GAEI+F P+A I  E       S  
Sbjct: 141 GDTGFKAFKTKYATIGVGICWDQWFPECARAMVLQGAEILFYPTA-IGSEPQDNNLDSRE 199

Query: 480 MWNVEARNAAITNCYFTAAINRVG 409
            W    +  A  N     A NR+G
Sbjct: 200 HWKRVMQGHAGANLVPLVASNRIG 223


>02_04_0642 +
           24686792-24686913,24687027-24687090,24688282-24688401,
           24688685-24688774,24688848-24688986,24689664-24689786,
           24689884-24689942
          Length = 238

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 288 QTGAPNAVGAAEVARSVEQAQVFVCRFPVSRSELVRELLVSRLG*W 425
           Q GAP AVGAA   +  E+ +    R  +S   LV+++L  R+  W
Sbjct: 41  QEGAPEAVGAAMATQKAEELE----RGVISIHNLVKDVLDKRMSNW 82


>02_01_0269 +
           1788788-1789508,1789629-1789658,1790127-1790368,
           1790595-1790803,1791924-1792182
          Length = 486

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +2

Query: 560 QFKTWCRPKQMFTAILPYLVANTGWPVLPSMXVVGFVKIADSRNVVLAMLPDH 718
           +   WC      T +L +  +NTGW    +   +    +A   NV+L   P+H
Sbjct: 166 EIAAWCDADHRRT-LLFHTFSNTGWLAYGNKTFIFRYLLASPNNVLLLFFPEH 217


>01_06_1117 -
           34633311-34634030,34634434-34634873,34635320-34635370,
           34635522-34635642
          Length = 443

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 352 SLCAGFPSAEVNSFGNSSLADSVDGRCEVAV 444
           SLC    ++E   F +SS A S DG CE  +
Sbjct: 85  SLCLCHSTSEKAGFEHSSCASSGDGNCEAGI 115


>01_01_1138 -
           9019049-9019159,9019525-9019606,9020059-9020177,
           9020977-9021096,9021313-9021383,9021801-9021948
          Length = 216

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +1

Query: 397 NSSLADSVDGRCEVAVRDSCVPSF--NVPHVLAAAFSGDRR 513
           +S++A+    R  +++   C P +   +PH +A AFSG+RR
Sbjct: 174 SSNIANKYLSRSHLSI--DCRPDWMTRIPHYIAVAFSGERR 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,361,332
Number of Sequences: 37544
Number of extensions: 456345
Number of successful extensions: 1359
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)