Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_L10
         (807 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   204   4e-53
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   199   2e-51
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   183   1e-46
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    32   0.39 
At5g23690.1 68418.m02777 polynucleotide adenylyltransferase fami...    31   1.2  
At2g34150.1 68415.m04180 expressed protein                             31   1.2  
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   2.1  
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa...    29   4.8  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  204 bits (499), Expect = 4e-53
 Identities = 93/151 (61%), Positives = 113/151 (74%)
 Frame = -2

Query: 806 KXFLAARAVVAIEXPADVXVISSRPFGQRAVLKFAAHNRCYAYCGRFTPGAFTNQIQAAF 627
           K  +AAR +VAIE P D+ V S+RP+GQRAVLKFA +    A  GR TPG FTNQ+Q +F
Sbjct: 61  KLQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSF 120

Query: 626 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 447
            EPRLLI+ DP  DHQPI E +  NIP+IA C+TDSP+RFVDI IP N K  HSIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFW 180

Query: 446 LLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 354
           LLAR VL++RG +   Q+WDV+VDLFFYR P
Sbjct: 181 LLARMVLQMRGTIAAGQKWDVMVDLFFYREP 211


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  199 bits (485), Expect = 2e-51
 Identities = 92/151 (60%), Positives = 111/151 (73%)
 Frame = -2

Query: 806 KXFLAARAVVAIEXPADVXVISSRPFGQRAVLKFAAHNRCYAYCGRFTPGAFTNQIQAAF 627
           K  +AAR +VAIE P D+ V S+RP+GQRAVLKFA +    A  GR TPG FTNQ+Q +F
Sbjct: 62  KLQMAARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSF 121

Query: 626 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 447
            EPRLLI+ DP  DHQPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++W
Sbjct: 122 SEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFW 181

Query: 446 LLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 354
           LLAR VL++RG +   Q+WDV+VDLFFYR P
Sbjct: 182 LLARMVLQMRGTILAAQKWDVMVDLFFYREP 212


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  183 bits (446), Expect = 1e-46
 Identities = 85/144 (59%), Positives = 105/144 (72%)
 Frame = -2

Query: 806 KXFLAARAVVAIEXPADVXVISSRPFGQRAVLKFAAHNRCYAYCGRFTPGAFTNQIQAAF 627
           K  +AAR +VAIE P D+ V S+RP+GQRAVLKFA +    A  GR TPG FTNQ+Q +F
Sbjct: 62  KLQMAARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSF 121

Query: 626 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 447
            EPRLLI+ DP  DHQPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++W
Sbjct: 122 SEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFW 181

Query: 446 LLAREVLRLRGVLPRDQRWDVVVD 375
           LLAR VL++RG +   Q+WDV+V+
Sbjct: 182 LLARMVLQMRGTILAAQKWDVMVN 205


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 620 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 471
           P  ++V D  +    I EAS + IPV+A+ + + PL F + I  P   + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181


>At5g23690.1 68418.m02777 polynucleotide adenylyltransferase family
           protein low similarity to SP|P13685 Poly(A) polymerase
           (EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
           profile PF01743: polyA polymerase family protein
          Length = 527

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -1

Query: 339 RMNNKPRNRLWYQLNQK*LLLSMKTGMKHWSQWLHGLK 226
           +++++PR+R W QLN K L LS     K   + L+GLK
Sbjct: 54  KVSDEPRDREWKQLNSKDLGLSSSMIAKSTRKVLNGLK 91


>At2g34150.1 68415.m04180 expressed protein
          Length = 700

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = +3

Query: 492 DSNVHKS*WGVCVAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCET 671
           D  +H+  W      S   +     FSN L  +  +Q +QE+   E S D  S  TW   
Sbjct: 308 DELIHQDPWAASEISSGTHSYSN-GFSNPLYDISGIQEHQESEEVESSCDTESIKTWTNG 366

Query: 672 SAIXVAP 692
           + + + P
Sbjct: 367 NLLGLKP 373


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 665 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 564
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 146

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -2

Query: 524 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 387
           D  L   ++A+ C TKS   +    +  ++ V  +   +P  +RWD
Sbjct: 49  DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,909,899
Number of Sequences: 28952
Number of extensions: 311888
Number of successful extensions: 738
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)