BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_T7_L09 (817 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 124 2e-29 SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 120 2e-28 SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 40 6e-04 SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.4 SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 27 2.4 SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.6 >SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A |Schizosaccharomyces pombe|chr 2|||Manual Length = 292 Score = 124 bits (299), Expect = 2e-29 Identities = 59/91 (64%), Positives = 68/91 (74%) Frame = -3 Query: 629 REXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 450 RE RL++V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+ Sbjct: 119 REPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWY 178 Query: 449 LLAREVLRLRGVLPRDQRWDVVVDLFFYHXP 357 LLAREVLR+RG L R WDV+ DL+FY P Sbjct: 179 LLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209 Score = 34.7 bits (76), Expect = 0.016 Identities = 16/26 (61%), Positives = 18/26 (69%) Frame = -1 Query: 748 SSRPFGQRAVLKFAAHTRXYAYCGTF 671 S+R +G RAVLKFAAHT A G F Sbjct: 80 STRTYGHRAVLKFAAHTGATAIAGRF 105 Score = 32.7 bits (71), Expect = 0.064 Identities = 14/22 (63%), Positives = 15/22 (68%) Frame = -2 Query: 696 GXTXIAGRFTPGAFTNQIQAAF 631 G T IAGRFTPG FTN I + Sbjct: 97 GATAIAGRFTPGNFTNYITRTY 118 >SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein S0B|Schizosaccharomyces pombe|chr 1|||Manual Length = 287 Score = 120 bits (290), Expect = 2e-28 Identities = 58/91 (63%), Positives = 67/91 (73%) Frame = -3 Query: 629 REXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 450 RE RL+IV DP D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+ Sbjct: 120 REPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWY 179 Query: 449 LLAREVLRLRGVLPRDQRWDVVVDLFFYHXP 357 LLAREVLRLRG + R W+V+ DL+FY P Sbjct: 180 LLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210 Score = 39.1 bits (87), Expect = 7e-04 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 748 SSRPFGQRAVLKFAAHTRXYAYCGTF 671 SSRP+G RAVLKFAAHT A G F Sbjct: 81 SSRPYGHRAVLKFAAHTGATAIAGRF 106 Score = 34.7 bits (76), Expect = 0.016 Identities = 22/60 (36%), Positives = 23/60 (38%) Frame = -2 Query: 810 KTFXAARAXVXXEXPXDGXXXHHGPSVSVLY*SLPRTPGXTXIAGRFTPGAFTNQIQAAF 631 K AAR E P D P G T IAGRFTPG FTN I + Sbjct: 60 KLVLAARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTY 119 >SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|Schizosaccharomyces pombe|chr 1|||Manual Length = 263 Score = 39.5 bits (88), Expect = 6e-04 Identities = 19/60 (31%), Positives = 32/60 (53%) Frame = -3 Query: 617 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 438 L+++L+P ++ EA ++P I + +TD+ R V IP N S L+ LL+R Sbjct: 182 LMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241 >SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual Length = 539 Score = 28.3 bits (60), Expect = 1.4 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = -3 Query: 575 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 465 T A + + LC+ +S RF D+A+ NTK +H I Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110 >SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr 3|||Manual Length = 611 Score = 27.5 bits (58), Expect = 2.4 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = -1 Query: 421 VVCFPVTSAGMLWLICSSTMXPEESEKD 338 V+ FP TS+G LI S + PEE KD Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598 >SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces pombe|chr 3|||Manual Length = 561 Score = 26.2 bits (55), Expect = 5.6 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -3 Query: 467 IGLMWWLLAREVLRLRGVLPRDQRWD 390 IGL W L REV R + + R++ WD Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,892,589 Number of Sequences: 5004 Number of extensions: 54684 Number of successful extensions: 135 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 128 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 135 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 398435810 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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