Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_L09
         (817 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   129   2e-30
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   124   9e-29
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   110   1e-24
At5g23690.1 68418.m02777 polynucleotide adenylyltransferase fami...    31   1.2  
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    31   1.2  
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa...    29   3.7  
At4g26590.1 68417.m03833 oligopeptide transporter OPT family pro...    29   4.9  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  129 bits (311), Expect = 2e-30
 Identities = 56/90 (62%), Positives = 68/90 (75%)
 Frame = -3

Query: 626 EXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWL 447
           E RLLI+ DP  DHQPI E +  NIP+IA C+TDSP+RFVDI IP N K  HSIG ++WL
Sbjct: 122 EPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWL 181

Query: 446 LAREVLRLRGVLPRDQRWDVVVDLFFYHXP 357
           LAR VL++RG +   Q+WDV+VDLFFY  P
Sbjct: 182 LARMVLQMRGTIAAGQKWDVMVDLFFYREP 211



 Score = 37.5 bits (83), Expect = 0.011
 Identities = 22/56 (39%), Positives = 25/56 (44%)
 Frame = -2

Query: 798 AARAXVXXEXPXDGXXXHHGPSVSVLY*SLPRTPGXTXIAGRFTPGAFTNQIQAAF 631
           AAR  V  E P D       P          +  G   IAGR TPG FTNQ+Q +F
Sbjct: 65  AARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSF 120


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  124 bits (298), Expect = 9e-29
 Identities = 55/90 (61%), Positives = 66/90 (73%)
 Frame = -3

Query: 626 EXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWL 447
           E RLLI+ DP  DHQPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WL
Sbjct: 123 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWL 182

Query: 446 LAREVLRLRGVLPRDQRWDVVVDLFFYHXP 357
           LAR VL++RG +   Q+WDV+VDLFFY  P
Sbjct: 183 LARMVLQMRGTILAAQKWDVMVDLFFYREP 212



 Score = 37.5 bits (83), Expect = 0.011
 Identities = 22/56 (39%), Positives = 25/56 (44%)
 Frame = -2

Query: 798 AARAXVXXEXPXDGXXXHHGPSVSVLY*SLPRTPGXTXIAGRFTPGAFTNQIQAAF 631
           AAR  V  E P D       P          +  G   IAGR TPG FTNQ+Q +F
Sbjct: 66  AARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSF 121


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  110 bits (264), Expect = 1e-24
 Identities = 49/83 (59%), Positives = 61/83 (73%)
 Frame = -3

Query: 626 EXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWL 447
           E RLLI+ DP  DHQPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WL
Sbjct: 123 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWL 182

Query: 446 LAREVLRLRGVLPRDQRWDVVVD 378
           LAR VL++RG +   Q+WDV+V+
Sbjct: 183 LARMVLQMRGTILAAQKWDVMVN 205



 Score = 37.5 bits (83), Expect = 0.011
 Identities = 22/56 (39%), Positives = 25/56 (44%)
 Frame = -2

Query: 798 AARAXVXXEXPXDGXXXHHGPSVSVLY*SLPRTPGXTXIAGRFTPGAFTNQIQAAF 631
           AAR  V  E P D       P          +  G   IAGR TPG FTNQ+Q +F
Sbjct: 66  AARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSF 121


>At5g23690.1 68418.m02777 polynucleotide adenylyltransferase family
           protein low similarity to SP|P13685 Poly(A) polymerase
           (EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
           profile PF01743: polyA polymerase family protein
          Length = 527

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -2

Query: 342 RMNNKPRNRLWYQLNQK*LLLSMKTGMKHWSQWLHGLK 229
           +++++PR+R W QLN K L LS     K   + L+GLK
Sbjct: 54  KVSDEPRDREWKQLNSKDLGLSSSMIAKSTRKVLNGLK 91


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 614 LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 474
           ++V D  +    I EAS + IPV+A+ + + PL F + I  P   + S
Sbjct: 134 VVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181


>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 146

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -3

Query: 527 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVV--DLFFYHXP 357
           D  L   ++A+ C TKS   +    +  ++ V  +   +P  +RWD  +   +  +H P
Sbjct: 49  DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWDACLARPISSFHTP 107


>At4g26590.1 68417.m03833 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe};
           contains Pfam profile PF03169: OPT oligopeptide
           transporter protein
          Length = 753

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 479 SSHSIGLMWWLLAR-EVLRLRGVLPRDQRWDVVVDLFFYH 363
           S+ S G  WWLL+  E +    +LP+   W    D+ FY+
Sbjct: 555 STVSFGTTWWLLSSVENICNTDMLPKSSPWTCPGDVVFYN 594


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,595,597
Number of Sequences: 28952
Number of extensions: 303430
Number of successful extensions: 774
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)