Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_L08
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    31   0.16 
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch...    27   3.5  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.1  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.1  

>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +3

Query: 294 LRVHHLAAGGGGTREGELIPLRTYPSPPSRGLEKGFCSTTAPXRW 428
           LR++     G  T    +  +   PSPPSR  +  FC    P RW
Sbjct: 137 LRIYEAMEPGNLTYWTLMNEIALMPSPPSRNEQPAFCVNWCPSRW 181


>SPBC3F6.01c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 366 DRCGEG*ALPLSFRHLLLRDGVLAEVEHRLPGLID 262
           +R  +G  LPL F + +LRD  L E+  + P LID
Sbjct: 171 ERFCQGKKLPLKFAYSILRD--LKELLEKTPSLID 203


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 569 GSGPAGYSGTPAALSGRPDG 628
           G GP G+ G P    G P G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGG 246


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 479 AASTPSSRPLTFTGGKPPSXRG 414
           A STP + P++   G PPS  G
Sbjct: 79  AGSTPKTTPVSLNAGVPPSNTG 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,064
Number of Sequences: 5004
Number of extensions: 50718
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)