Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_L08
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409... 37 0.018
07_03_1257 - 25241194-25242018 35 0.074
09_02_0297 - 7051592-7052469,7053197-7053302,7053396-7053471,705... 32 0.52
12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768... 31 0.91
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 31 1.6
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 30 2.1
09_03_0218 + 13539481-13540082,13540171-13540276,13540645-135409... 29 3.7
11_07_0002 - 27171791-27172222 29 4.9
10_05_0088 - 9037516-9037997,9038171-9038513,9039512-9039787 29 4.9
09_02_0279 + 6702517-6702948 29 4.9
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 29 4.9
01_06_1170 + 35087705-35088211 29 4.9
09_01_0043 + 790859-790873,791410-791603,792521-792605,792719-79... 29 6.4
07_03_0766 - 21354494-21354772,21355094-21355247,21355340-213555... 29 6.4
06_03_0384 + 20174441-20175788,20176215-20176858 29 6.4
12_02_0672 - 21726416-21726664,21727654-21727744,21727914-217279... 28 8.5
12_01_0849 + 7948693-7948996,7949829-7950610 28 8.5
12_01_0023 - 173691-174119 28 8.5
09_04_0011 + 13703564-13703766,13704685-13705526,13705628-137057... 28 8.5
08_01_0529 + 4589434-4589652,4589897-4589953,4590106-4590237 28 8.5
06_03_1310 + 29238644-29240260 28 8.5
06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,440... 28 8.5
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311... 28 8.5
>03_06_0642 +
35239658-35240083,35240167-35240238,35240305-35240919,
35241253-35241435,35241604-35241663,35241733-35241936,
35242497-35242745,35243609-35243707,35243760-35243858,
35244463-35244480,35244668-35244862,35244981-35245073,
35245265-35245531,35245884-35246102
Length = 932
Score = 37.1 bits (82), Expect = 0.018
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = -1
Query: 584 PLD-QNQPAGSGRDTP-PTGRSFVTP*QRARVPVACRAASTPSSRPLTFTGGKPPSXRGR 411
PLD + PA RD P F+ P RAR P A +++ SS P +F +PP R
Sbjct: 2 PLDPDSSPAPPHRDWFFPPAPPFL-PSSRARTPRAPFPSTSRSSNPYSFPDRRPP-PTPR 59
Query: 410 SRAKSLLQPPARRRR 366
SR++S L PP ++++
Sbjct: 60 SRSRSPLPPPEQQKQ 74
>07_03_1257 - 25241194-25242018
Length = 274
Score = 35.1 bits (77), Expect = 0.074
Identities = 25/81 (30%), Positives = 40/81 (49%)
Frame = -1
Query: 623 QAAQTVPLVSRNTPLDQNQPAGSGRDTPPTGRSFVTP*QRARVPVACRAASTPSSRPLTF 444
++ + +P R+ L P +GRD+ P+ S +TP R R +A + +T RP
Sbjct: 35 RSPRPMPQAVRHRSLQPPAPDVAGRDSTPSPAS-MTP-SRCRTTLA--STTTTRRRPPRR 90
Query: 443 TGGKPPSXRGRSRAKSLLQPP 381
+P RGR+ A + QPP
Sbjct: 91 LHSRPRHPRGRTTASTTPQPP 111
>09_02_0297 -
7051592-7052469,7053197-7053302,7053396-7053471,
7053581-7053648
Length = 375
Score = 32.3 bits (70), Expect = 0.52
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = -1
Query: 419 RGRSRAKSLLQPPARRRRIGAERDELSLSRSATSCCEMVYSQKSSIAFQDSSTDCRTSDC 240
+G + A L+ PARR +S++R+A CC V+ + +S DC++S C
Sbjct: 98 QGNTNAFRELRCPARREGSYGGHTSISINRAA--CCSCVFFESTSSRRSCFRLDCKSS-C 154
Query: 239 RASWLRQSAATSPV 198
R+ SP+
Sbjct: 155 RSDEQENQIMRSPL 168
>12_01_0830 -
7678038-7678444,7678996-7680943,7681231-7681983,
7682701-7682824,7683590-7683723
Length = 1121
Score = 31.5 bits (68), Expect = 0.91
Identities = 22/83 (26%), Positives = 32/83 (38%)
Frame = -1
Query: 635 TAVRQAAQTVPLVSRNTPLDQNQPAGSGRDTPPTGRSFVTP*QRARVPVACRAASTPSSR 456
TA+ + T + PL S R P G +TP +R+ P + R ++T S
Sbjct: 114 TALTRTRSTNSSSRCSPPLSLQSSTPSRRSPTPPGNKTLTPPRRSPSPASRRMSATSSGP 173
Query: 455 PLTFTGGKPPSXRGRSRAKSLLQ 387
L T G P R + Q
Sbjct: 174 TLNGTRGASPVKTNRRSSSPKFQ 196
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/73 (30%), Positives = 32/73 (43%)
Frame = -1
Query: 587 TPLDQNQPAGSGRDTPPTGRSFVTP*QRARVPVACRAASTPSSRPLTFTGGKPPSXRGRS 408
+PL + G R +P RS +P + R V R S PP RGRS
Sbjct: 483 SPLRYRERGGYRRPSPRHSRSR-SPAEHQRRDVRNRLRSGRDGGGPDHRNSSPPVNRGRS 541
Query: 407 RAKSLLQPPARRR 369
R++S + P++ R
Sbjct: 542 RSRSKSRDPSKSR 554
>07_03_0965 - 22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 30.3 bits (65), Expect = 2.1
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 1/142 (0%)
Frame = -1
Query: 746 GLPRSTLQ-PDSAAHPQGRPADGAFETNRRL*NVGRLGTAVRQAAQTVPLVSRNTPLDQN 570
G+P + Q S+A G PA G N+ + + + Q P+ S +T +
Sbjct: 1303 GVPSQSPQLKPSSARATGAPA-GVASPGASPSNLIVMKSGLHQQQAKAPMQSLST--SNH 1359
Query: 569 QPAGSGRDTPPTGRSFVTP*QRARVPVACRAASTPSSRPLTFTGGKPPSXRGRSRAKSLL 390
QP S + P T S +R A A+ +PS+ TGG PP+ +
Sbjct: 1360 QPQSSSKMGPVTNMS-TGGGDLSRSSNAPVASGSPSNSVSKSTGGSPPASGSAKGVPPAV 1418
Query: 389 QPPARRRRIGAERDELSLSRSA 324
Q P+ +++ S ++SA
Sbjct: 1419 QLPSPQQQSAKNPASTSGAKSA 1440
>09_03_0218 +
13539481-13540082,13540171-13540276,13540645-13540960,
13541187-13541263,13541269-13541895,13542783-13543112,
13543442-13543747,13543824-13543896,13544004-13544089,
13544219-13544396,13545311-13545756
Length = 1048
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -1
Query: 419 RGRSRAKSLLQPPARRRRIGAERDEL 342
RGR R+++ PPA+RRR+ +E+
Sbjct: 73 RGRGRSRAAPSPPAKRRRVEEPEEEV 98
>11_07_0002 - 27171791-27172222
Length = 143
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 563 QAGSGPAGYSGTPAALSGRPDG 628
+AGS PAG G+PA G P G
Sbjct: 65 RAGSTPAGVRGSPAGAGGSPGG 86
>10_05_0088 - 9037516-9037997,9038171-9038513,9039512-9039787
Length = 366
Score = 29.1 bits (62), Expect = 4.9
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +1
Query: 370 RRLAGGWRRDFARLRPLXDGGFPPV---KVKGRLEGVEAARHATGTLARC*GVTKERPV 537
RR GGWR+ A + P+ G PPV + G G EAA A+ G R V
Sbjct: 31 RRGRGGWRQWVAAMPPVAGGDAPPVVSPRNGGLTGGEEAATRPRVATAQPDGAQARREV 89
>09_02_0279 + 6702517-6702948
Length = 143
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 563 QAGSGPAGYSGTPAALSGRPDG 628
+AGS PAG G+PA G P G
Sbjct: 65 RAGSTPAGVRGSPAGAGGSPGG 86
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -1
Query: 545 TPPTGRSFVTP*QRARVPVACRAASTPSSRPLTFTGGKPPSXRGRSRAKSLLQPPARR 372
+P S P +R PVA R+ S +R + + S + RSR++SL + P R+
Sbjct: 492 SPRRSMSKSLPRSVSRSPVARRSRSPVKARTRSISRSSARSLQRRSRSRSLERSPVRK 549
>01_06_1170 + 35087705-35088211
Length = 168
Score = 29.1 bits (62), Expect = 4.9
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 240 AVRCPAVRR*VLEGDARLLRVHHLA-AGGGGTREGELIPLRTYPSPPSRGLEKGFCSTTA 416
A R PA R +LE RLL + A GGG R GE P+PP R + +TT+
Sbjct: 107 AGRAPARRSWLLEALKRLLCWLGIGGAWGGGRRRGEEPAAPCPPAPPPRMQLLDYLTTTS 166
>09_01_0043 +
790859-790873,791410-791603,792521-792605,792719-793075
Length = 216
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 563 QAGSGPAGYSGTPAALSGRPDGLPYRDG 646
++GSG AG G+ A GR DG RDG
Sbjct: 118 RSGSGKAGCVGSRADQDGRLDGREVRDG 145
>07_03_0766 -
21354494-21354772,21355094-21355247,21355340-21355577,
21355659-21355866,21356148-21356275,21356384-21356521,
21357234-21358080
Length = 663
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 227 LRQSAATSPVLFARXGHGVAPEGL 156
L+Q+A+TSP LFA G AP+ +
Sbjct: 56 LQQNASTSPTLFAAGALGAAPDAV 79
>06_03_0384 + 20174441-20175788,20176215-20176858
Length = 663
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -1
Query: 431 PPSXRGRSRAKSLLQPPARRRRIGAERDELSLSRSATSC 315
PPS RS K+ PARR R + R LS+ A C
Sbjct: 255 PPSHPHRSGGKNDTATPARRTRTRSRRKHLSVVTVAVVC 293
>12_02_0672 -
21726416-21726664,21727654-21727744,21727914-21727981,
21728684-21728809,21728893-21729113,21729876-21729903
Length = 260
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 404 AKSLLQPPARRRRIGAERDELSLSRSATSCCEM 306
A SLL+PP+ R R + +RS TSCC M
Sbjct: 169 ANSLLRPPSMRVRDYRSEQQQGAARS-TSCCAM 200
>12_01_0849 + 7948693-7948996,7949829-7950610
Length = 361
Score = 28.3 bits (60), Expect = 8.5
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Frame = -1
Query: 542 PPTGRSFVTP*QRARVP--VACRAASTPSSRPLTFTGGKPPSXR----GRSRAKSLLQPP 381
PP SF P +RAR P VA ++ +SR + T P+ R R+ SL PP
Sbjct: 282 PPHRSSFGNPFRRARAPADVAISSSGIAASRLPSATPPLHPNPACVRYRRLRSSSLTTPP 341
Query: 380 ARRRRIGAER 351
R + A R
Sbjct: 342 VGRSSLPARR 351
>12_01_0023 - 173691-174119
Length = 142
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 427 GGFPPVKVKGRLEGVEAARHATGTL 501
G P + ++GR EG RHA G+L
Sbjct: 112 GNLPALGLEGRREGARGGRHARGSL 136
>09_04_0011 +
13703564-13703766,13704685-13705526,13705628-13705704,
13706294-13706339,13706479-13706722,13710078-13710150,
13711119-13711235
Length = 533
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 312 AAGGGGTREGELIPLRTYPSPPS 380
A GGGG + +P R PSPPS
Sbjct: 119 AGGGGGGGGADALPWRHRPSPPS 141
>08_01_0529 + 4589434-4589652,4589897-4589953,4590106-4590237
Length = 135
Score = 28.3 bits (60), Expect = 8.5
Identities = 25/91 (27%), Positives = 37/91 (40%)
Frame = -1
Query: 506 RARVPVACRAASTPSSRPLTFTGGKPPSXRGRSRAKSLLQPPARRRRIGAERDELSLSRS 327
RA P R + RP + G AKS+ + ARR R AE+DE +
Sbjct: 19 RAEQPATTRRRPPHAGRPPPPSSGGGSPAEVAPAAKSVAEEKARRLRRRAEKDE----KR 74
Query: 326 ATSCCEMVYSQKSSIAFQDSSTDCRTSDCRA 234
+ C + S + + F+ C TS +A
Sbjct: 75 SEECSDS--SAYALVQFKQKVITCCTSRLQA 103
>06_03_1310 + 29238644-29240260
Length = 538
Score = 28.3 bits (60), Expect = 8.5
Identities = 25/82 (30%), Positives = 29/82 (35%)
Frame = -1
Query: 626 RQAAQTVPLVSRNTPLDQNQPAGSGRDTPPTGRSFVTP*QRARVPVACRAASTPSSRPLT 447
R+ PL +PL + P TPP S TP P + S SS P
Sbjct: 370 RRPGGRTPLAPHRSPLPHHMPPRRTPPTPPPPSS-PTP-SHLPPPPPTYSESPKSSMP-- 425
Query: 446 FTGGKPPSXRGRSRAKSLLQPP 381
PPS G S S PP
Sbjct: 426 -PSTSPPSSHGASPPSSSSSPP 446
>06_01_0609 +
4404287-4405023,4405496-4405631,4405724-4405876,
4405985-4406128,4406224-4406375,4406453-4406552,
4406653-4406775,4406876-4407037,4407190-4407247,
4407324-4407502,4408294-4408402,4408567-4408637,
4408891-4408986,4409727-4409803,4410983-4411066,
4411473-4411607,4411744-4411819,4413072-4413167,
4413580-4413671,4413745-4413868,4413966-4414052
Length = 996
Score = 28.3 bits (60), Expect = 8.5
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = -1
Query: 626 RQAAQTVPLVSRNTPLDQNQPAGSGRDTP-PTGRSFVTP*QRARVPVACRAASTPSSRPL 450
R+ + P+ + +P+ + S R PT + TP + P RAA +PS P
Sbjct: 41 RRKPKAPPVAAPMSPVTPSSVRRSSRLLETPTKVTSETPVKPTPTPKRKRAAPSPS--PK 98
Query: 449 TFTGGKPPSXRGRSRAKSLLQPPARR 372
T T +P R R R + + P +R
Sbjct: 99 TPTQSEPKRQRQRQRQRQQPKKPKKR 124
>04_03_0181 -
12327281-12328620,12330922-12331015,12331079-12331183,
12331404-12332592,12333268-12333461
Length = 973
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 193 NRTGLVAADCRSHDARQSDVRQSVDESWK 279
N TG+V AD +S A + + R VD+ W+
Sbjct: 405 NITGIVKADDQSQLAEKEEARAKVDKVWR 433
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,161,957
Number of Sequences: 37544
Number of extensions: 510670
Number of successful extensions: 2061
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2055
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -