Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_L08
         (872 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    31   1.4  
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    30   2.5  
U40030-2|AAR12978.2|  292|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z66521-8|CAA91394.1|  281|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    29   5.7  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    29   5.7  

>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 24/96 (25%), Positives = 40/96 (41%)
 Frame = -1

Query: 605 PLVSRNTPLDQNQPAGSGRDTPPTGRSFVTP*QRARVPVACRAASTPSSRPLTFTGGKPP 426
           P  S++ P  + + + S   +P   R  + P +R R P A +  S P+ +        PP
Sbjct: 379 PSASKSPPAPRRRRSPSKSRSPAPKRE-IPPARRRRSPSASK--SPPAPKRAKSRSKSPP 435

Query: 425 SXRGRSRAKSLLQPPARRRRIGAERDELSLSRSATS 318
           + R R        P  RRRR  ++  +    R + S
Sbjct: 436 APRRRRSPSQSKSPAPRRRRSPSKSPQAPRRRRSPS 471


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
 Frame = -1

Query: 605 PLVSRNTPLDQNQPAGSGRDTPPTGRSFVTP*QRARVPV--ACRAASTPSSRPLT---FT 441
           P+V  + P  + +P  +   +PP  R   +P +R+R P     R+ S P  R ++     
Sbjct: 70  PVVKNSPPKRKREPIRAPSASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRRRISRSPVR 129

Query: 440 GGKPPSXRGRSRAKSLLQPPARRRR 366
             + P  R  SR++S   PP R++R
Sbjct: 130 RSRSPPRRQVSRSRS--PPPRRQQR 152


>U40030-2|AAR12978.2|  292|Caenorhabditis elegans Hypothetical
           protein T13C2.7 protein.
          Length = 292

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
 Frame = -1

Query: 596 SRNTPLDQNQPAGSGRDTPPTGRSFVTP*QRARVPVACRAASTPSSRPLTFTGGKPPSXR 417
           S N P   +Q A    D   TG S  T       P          +R  +  G  P    
Sbjct: 153 SLNVPFTTSQQAIQVEDETRTGTSS-TRQSVCSAPTPHPLEVNLPNRSKSHIGFLPEIVV 211

Query: 416 GRSRAKS--LLQPPARRRRIGAERDELSLSRSATSCCEMVYSQKSSIA 279
              R K   LL PP RRR+    ++       + SC ++V S+KSS++
Sbjct: 212 TEERPKLCLLLPPPNRRRKSVTTQNNTIPIHKSVSCQQLVLSRKSSMS 259


>Z66521-8|CAA91394.1|  281|Caenorhabditis elegans Hypothetical
           protein W02B12.2 protein.
          Length = 281

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -1

Query: 434 KPPSXRGRSRAKSLLQ-PPARRRRIGAERDELSLSRSAT 321
           + P  R RSR+ +  + PPARRR  G++R +   SRSA+
Sbjct: 192 RSPRRRSRSRSPTRSRSPPARRRSPGSDRSDRK-SRSAS 229


>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
            K04H4.1b protein.
          Length = 1502

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = +2

Query: 551  VPTRQAGSGPAGYSGTPA--ALSG--RPDGLPYRDGL 649
            VP +Q  SG  GY G P    + G    DG P RDGL
Sbjct: 1129 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGL 1165


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
            K04H4.1a protein.
          Length = 1759

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = +2

Query: 551  VPTRQAGSGPAGYSGTPA--ALSG--RPDGLPYRDGL 649
            VP +Q  SG  GY G P    + G    DG P RDGL
Sbjct: 1386 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGL 1422


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
            protein.
          Length = 1758

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = +2

Query: 551  VPTRQAGSGPAGYSGTPA--ALSG--RPDGLPYRDGL 649
            VP +Q  SG  GY G P    + G    DG P RDGL
Sbjct: 1385 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGL 1421


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,200,172
Number of Sequences: 27780
Number of extensions: 336216
Number of successful extensions: 1013
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)