Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_L08
         (872 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   4.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.9  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   8.5  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   8.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   8.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   8.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   8.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   8.5  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 172 TPCPXLANRTGLVAADCRSHDARQSD 249
           +P P + NR+GLV+        R+ D
Sbjct: 378 SPLPSIRNRSGLVSGSSTPGTGREHD 403


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 339 PLSFRHLLLRDGVLAEVEHRLPGLIDGLPDIGLPSIVATTVGSDKS 202
           PL  +HL + D       H +PG++ G+    L + +AT    D S
Sbjct: 317 PLIQKHLKIHDTCGVHNLHGMPGILGGIFG-ALMAALATEASYDYS 361


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 554  PTRQAGSGPAGYSG 595
            P+RQ GSG  G+ G
Sbjct: 1923 PSRQTGSGHGGHGG 1936


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 476 ASTPSSRPLTFTGGKPPSXRGRSRAKSLLQPPARR 372
           A   ++RP+     +PP  R R  A+S  +P   R
Sbjct: 68  AEPGNNRPIYIPQPRPPHPRLRREAESEAEPGNNR 102


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +1

Query: 559 PAGWFWSSGVFRDTSGTV 612
           PAGW W    F    G V
Sbjct: 162 PAGWIWGDQGFLKKLGAV 179


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 575 GPAGYSGTPAALSGRPDGL 631
           G  GY+G P  +SG  + L
Sbjct: 420 GIGGYNGLPTVMSGLDESL 438


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 324 HLLLRDGVLAEVEHRLPGLIDGLPDIG 244
           H LL+D V    E R   + DG+ +IG
Sbjct: 177 HALLKDPVKEFWERRTLQISDGIENIG 203


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 324 HLLLRDGVLAEVEHRLPGLIDGLPDIG 244
           H LL+D V    E R   + DG+ +IG
Sbjct: 230 HALLKDPVKEFWERRTLQISDGIENIG 256


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 1/94 (1%)
 Frame = -1

Query: 851 SSRSQDFRAHPXNXSXAXLHPTCDPXRGQNPDEVRGLPRSTLQPDSAAHPQGRPADGAFE 672
           S+ S D   H  + S     P C   R  +     G+   T +PD  A      A  +  
Sbjct: 546 STSSGDDELHRASLSKTPQPPQCPRFRKLDSPSDSGIESGTEKPDKPASSSASSAPTSVC 605

Query: 671 TNRRL*NVGRLGTAV-RQAAQTVPLVSRNTPLDQ 573
           ++ R  +       V ++  Q  PL   N+ +D+
Sbjct: 606 SSPRSEDKEVEDMPVLKRVLQAPPLYDTNSLMDE 639


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,947
Number of Sequences: 438
Number of extensions: 4243
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)