Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_L06
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0496 - 17807720-17808078,17808503-17809139                       29   3.4  
01_06_0581 - 30386018-30386440                                         29   4.5  
03_05_1116 + 30522573-30523112,30523201-30523353,30524053-30524325     29   6.0  

>08_02_0496 - 17807720-17808078,17808503-17809139
          Length = 331

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 737 KXIYSMFEXXSVGXDGSVQCGAEPGPWRGGSSRG 636
           + ++S F   +VG +G V CG   G WR    +G
Sbjct: 245 RDVFSWFRGMAVGGEGLVVCGGLVGRWRVDLQQG 278


>01_06_0581 - 30386018-30386440
          Length = 140

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 272 SGVRSQVLERLEMRLRSGGGGARRQ 346
           SG+  +V +R+E   R GGGG RR+
Sbjct: 31  SGIEVKVRKRVEKEARMGGGGRRRR 55


>03_05_1116 + 30522573-30523112,30523201-30523353,30524053-30524325
          Length = 321

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = +1

Query: 613 PXKKSGTLPRELPPRH---GPGSAPHWTDPS-XPTLLXSN 720
           P + SG LPR LP RH     G    W+D    PT+  SN
Sbjct: 206 PLRTSGLLPRALPARHLTILSGKITEWSDGRVWPTVRASN 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,629,802
Number of Sequences: 37544
Number of extensions: 206828
Number of successful extensions: 848
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)