Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_L04
(800 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 33 0.047
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 31 0.19
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 29 0.58
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 29 1.0
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc... 29 1.0
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 28 1.8
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 28 1.8
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 26 5.4
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce... 26 5.4
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 26 5.4
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 26 7.2
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu... 25 9.5
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun... 25 9.5
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 33.1 bits (72), Expect = 0.047
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -1
Query: 737 SGSMQGFLMKRGKRTADTNSENSYSVKPKTRSSITLERTKEPKGVLKLSELNVAFAPPKI 558
S S Q L K + + S K + ++++K+PK L L+ + FAPPK+
Sbjct: 1879 SSSKQDVLNKIDESEIEQASSKKPGYVEKNKDKGHMKKSKKPKSKLALAAMAHGFAPPKV 1938
Query: 557 GH 552
H
Sbjct: 1939 EH 1940
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 31.1 bits (67), Expect = 0.19
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -2
Query: 163 RFPFQLVTPERTYCLAATTHEDRDCWLAVLQQTIKRSLTPQ-DSTKVNREKKKKK 2
+F F+++TP+ AT+ + W+ +Q +I S+ + T +N E+ K
Sbjct: 580 KFCFEVITPQTKRTYQATSKAEMHSWIEAIQYSISESIVQKGKGTSMNSEETSVK 634
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 29.5 bits (63), Expect = 0.58
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 163 RFPFQLVTPERTYCLAATTHEDRDCWLAVLQQTIKRS 53
RF F++VTP+ AT+ E+ D W+ + + K S
Sbjct: 598 RFCFEVVTPKLKRLYQATSAEEMDSWIEAICEAAKIS 634
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 28.7 bits (61), Expect = 1.0
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = +1
Query: 568 GAKATFNSDNLRTPFGSLVLSNVILERVFGFTEYEFSELVSAVLLPRFIRKPCMLPDNMT 747
G + N D++ T FG +L ++++ F EF + V LLP + D
Sbjct: 203 GKSESLNVDHISTTFGLELLESILVNHHRLFQIPEFQDSVRKDLLPIITASLASMSDFPV 262
Query: 748 DVRDDRIL 771
+R RIL
Sbjct: 263 ALRISRIL 270
>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 488
Score = 28.7 bits (61), Expect = 1.0
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Frame = -2
Query: 289 NRKLMYHDEPLDAYPKGEIFVGNESNGYCIRVSNTGNGCKEARF-----PFQ-LVTPERT 128
N + H L +P G +FV NG +R T +G + +F P + L E
Sbjct: 329 NITVAQHITSLAVHPDGNLFVAGLENGE-LRFFETSSGNELTKFGPHSSPVKTLQFGENG 387
Query: 127 YCLAATTHEDRDCWLAVLQQT 65
Y L TT++D D ++ L+++
Sbjct: 388 YWLVVTTNDDSDIFIWDLRKS 408
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 27.9 bits (59), Expect = 1.8
Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Frame = -1
Query: 737 SGSMQGFLMKRGKRTADTNS----ENSYSVKPKTRSSITLERTKEPKGVLKLSELNVAFA 570
SGS G L K D NS + Y + + L P GVL + L +F
Sbjct: 556 SGSFLGILKIANKFDDDENSIDVVRDIYVPLNQKGMNPNLTVRDPPAGVL-IFRLQESFT 614
Query: 569 PPKIGHMNSMQLTFMKDGTTR 507
P GH+NSM + K T R
Sbjct: 615 YPNAGHVNSMLTSKAKTVTRR 635
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -2
Query: 271 HDEPLDAYPKGEIFVGNESNGYCIRVSNTGNGCKE 167
H+ P G ++ ++++GY + S+ NG KE
Sbjct: 362 HNIPCTCMISGRCYITSQNHGYAVDASSLSNGWKE 396
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -1
Query: 713 MKRGKRTADTNSENSYSVKPKTRSSITLERTKEPKGVLK-LSELNVA 576
+KR + A+ + SVKP ++ + KE GV K LSEL+ +
Sbjct: 9 LKREAKKAERLAAKGESVKPSKKNGTKNGKDKEVDGVTKDLSELSTS 55
>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 722 GFLMKRGKRTADTNSENSYSVKPKTRSSITLERTKEPKGVLKL 594
G L+ K TA ++ + +KPK S+ + TK+PK KL
Sbjct: 202 GGLIAFRKATAHQSAMKEF-LKPKDTLSVMITDTKQPKSTKKL 243
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Frame = -1
Query: 716 LMKRGKRTADTNSENSYSVKPKTRSSITLERTKEP------KGVLKLSELN 582
L + A ENSY+ PK + S+ +R K P + VLK ++LN
Sbjct: 110 LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLN 160
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 364 RNLLVGDE*DPTPESTETQLEVDGVV 441
RNLL+ ++ PTP++T T + GV+
Sbjct: 17 RNLLLQEKGFPTPKATSTGTTIVGVI 42
>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 493 ITRSPEVISNWYTAIRCAQLHLLQVAFPSTPESDL 389
I + V++N+Y+ I C++L +L PS E L
Sbjct: 341 IEHNIRVVANYYSRIHCSRLGVLLDMSPSETEQFL 375
>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 493 ITRSPEVISNWYTAIRCAQLHLLQVAFPSTPESDL 389
I + V++N+Y+ I C++L +L PS E L
Sbjct: 341 IEHNIRVVANYYSRIHCSRLGVLLDMSPSETEQFL 375
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,215,235
Number of Sequences: 5004
Number of extensions: 66842
Number of successful extensions: 184
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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