Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_L04
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0038 - 21769936-21770199,21770785-21771198,21771274-217714... 40 0.003
01_06_1395 + 37010446-37010895 38 0.012
12_02_1139 - 26402332-26402367,26402915-26402953,26403136-264032... 30 2.5
09_02_0204 - 5768596-5768793,5769857-5770006,5770407-5770583 29 5.7
12_01_0559 + 4527769-4527924,4528038-4528129,4528799-4528905,452... 28 7.5
07_01_1107 + 10205351-10207519 28 7.5
03_02_0415 - 8263459-8263611,8263788-8263919,8264841-8264936,826... 28 7.5
09_04_0654 - 19247051-19247305,19247466-19247534,19247618-192477... 28 9.9
08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278... 28 9.9
06_01_0117 + 912780-912959,913754-913828,914059-914112,914848-91... 28 9.9
>05_05_0038 -
21769936-21770199,21770785-21771198,21771274-21771434,
21771544-21771607,21771682-21771864,21772355-21772520,
21773397-21773528,21775085-21775599
Length = 632
Score = 39.5 bits (88), Expect = 0.003
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Frame = -2
Query: 361 REGWLWKTGPRPTDAHRRRWFTLDNRKLMYHDEPLDAYPKGEIFVGNESNGYCIRVSNTG 182
R GWL K G RRRWF L +L + + A +G + G C+ V
Sbjct: 40 RTGWLNKQGEY-IKTWRRRWFVLKQGRLFWFKDA--AVTRGSVPRGVIPVATCLTVKGAE 96
Query: 181 NGCKEARFPFQLVTPERTYCLAATTHEDRDCWL-AVLQQTIKRSLTPQDSTKVNREKK 11
+ +F F+L TP T A + ++++ W+ ++ + ++ S + D+ V+ + +
Sbjct: 97 DVINR-QFAFELSTPTDTMYFIADSEKEKEEWINSIGRSIVQHSRSVTDAEVVDYDSR 153
>01_06_1395 + 37010446-37010895
Length = 149
Score = 37.5 bits (83), Expect = 0.012
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Frame = -2
Query: 361 REGWLWKTGPRPTDAHRRRWFTLDNRKLMYHDE---PLDAYPKGEIFVGNESNGYCIRVS 191
R GWL K G RRRWF L +L + + + P+G I V C+ V
Sbjct: 24 RAGWLTKQGEY-IKTWRRRWFVLKQGRLFWFKDSGVTRASVPRGVIPVAT-----CLTVK 77
Query: 190 NTGNGCKEARFPFQLVTPERTYCLAATTHEDRDCWLAVLQQTI 62
+ +F F+L TP T A + ++++ W+ + ++I
Sbjct: 78 GAEDTLNR-QFAFELSTPAETMYFIADSEKEKEEWINSIGRSI 119
>12_02_1139 -
26402332-26402367,26402915-26402953,26403136-26403287,
26403496-26403997,26404260-26404373,26404509-26404736,
26405375-26405457,26405677-26405824,26406778-26406861
Length = 461
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -1
Query: 686 TNSENSYSVKPKTRSSITLERTKEPKGVLKLSELNVAFAPPKIGHMNSMQLTFMKDGT 513
TNS S +KPK I+ E +P + S N P ++ + +L+ +GT
Sbjct: 331 TNSLGSSKLKPKPSDEISEEVNSQPSNLASRSTSNPKERPTQVNASSKKRLSLPNNGT 388
>09_02_0204 - 5768596-5768793,5769857-5770006,5770407-5770583
Length = 174
Score = 28.7 bits (61), Expect = 5.7
Identities = 23/80 (28%), Positives = 37/80 (46%)
Frame = -3
Query: 369 ISHVKAGCGRLDPDLLTLTEDAGSPSIIGNSCTTTSRLMLIPRARFLSVTNQTATALEFR 190
I ++ CG + PDL T T+D + G+ TT + I R L V+ R
Sbjct: 75 IENILDKCGVIAPDLPTKTDDLSHST--GHGWTTREKENSIRHYRRLHVSMVLHQDRLRR 132
Query: 189 IRAMAARRRGSLSSW*LQKE 130
+R M+ R R L ++ + +E
Sbjct: 133 VRQMSTRLRRRLYAFLITRE 152
>12_01_0559 +
4527769-4527924,4528038-4528129,4528799-4528905,
4528987-4529042,4529196-4529346,4530223-4530528,
4530753-4531597
Length = 570
Score = 28.3 bits (60), Expect = 7.5
Identities = 20/53 (37%), Positives = 24/53 (45%)
Frame = +1
Query: 556 PIFGGAKATFNSDNLRTPFGSLVLSNVILERVFGFTEYEFSELVSAVLLPRFI 714
P+ A F LR PF LV N +E T Y SEL AV +PR +
Sbjct: 63 PVPVDVTAAFVEIRLRDPFFRLV--NGFVENPHKKTGYSISELAEAVGIPRVL 113
>07_01_1107 + 10205351-10207519
Length = 722
Score = 28.3 bits (60), Expect = 7.5
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Frame = -1
Query: 725 QGFLMKRGK-RTADTNSENSYSVKPKTRSSITLERTKEPKGVLKLSELNVAFAPPKIGHM 549
QGF+ RG+ R D + Y + + ++ KG + +L A GH
Sbjct: 476 QGFIKTRGECRPEDVGAGYFYDLVARCFFQLSPSHGIG-KGKYVMHDLYQELAQFVSGHE 534
Query: 548 NSM--QLTFM-KDGTTRHIYVYHEEP*SNKQLV 459
M QL D TTRH+ + H+E S+K+L+
Sbjct: 535 CRMIHQLNLTGADKTTRHLSIVHDESNSDKELL 567
>03_02_0415 -
8263459-8263611,8263788-8263919,8264841-8264936,
8265021-8265137,8265352-8265435,8265517-8265577,
8266217-8266266,8266544-8266633,8267539-8267757,
8269207-8269262,8269469-8269546,8269707-8269811,
8269925-8270069,8270310-8270388,8270470-8270537,
8271550-8271626,8272676-8272712,8273107-8273232,
8273770-8273805
Length = 602
Score = 28.3 bits (60), Expect = 7.5
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Frame = -2
Query: 313 RRRWFTLDNRKLMYHDEPLDAYPKGEIFVGNESNGYCIRVSNTGN-GCKEARFPFQLVTP 137
++RWF L L++ +A P+G + I ++N+G+ KE + ++ P
Sbjct: 74 KKRWFILTRASLVFFRSDPNAPPRGNEPIVTLGG---IDLNNSGSVVVKEDKKLLTVLFP 130
Query: 136 E----RTYCLAATTHEDRDCWLAVLQQTIKRS 53
+ RT+ L A T E+ + W + L+ + ++
Sbjct: 131 DGRDGRTFTLKAETTEELNEWRSALENALAQA 162
>09_04_0654 -
19247051-19247305,19247466-19247534,19247618-19247705,
19248010-19248105,19248650-19248763,19248852-19248985,
19249880-19250326
Length = 400
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 355 GWLWKTGPRPT-DAHRRRWFTLDNRKLMYHDEPLDAYPKGEIFVGNESNG 209
GW+ ++ P+ D H + TLD R+ HD+ +D+ E SNG
Sbjct: 312 GWVLESIPQDIIDTHELQTITLDYRRECQHDDIVDSLTYIEEGEEKSSNG 361
>08_02_0969 -
23126389-23126670,23126764-23126947,23127017-23127834,
23127953-23128642
Length = 657
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 406 TPESDLIHRLPRDFAREGWLWKTGPRPTDAHRRRW 302
T E+DL+H + R LW P P+ H+ W
Sbjct: 152 TVETDLVHPVDAGDTRVISLWAWTPNPSRIHKHVW 186
>06_01_0117 +
912780-912959,913754-913828,914059-914112,914848-914913,
915137-915241,915454-915570,915827-915927,916012-916058,
916664-916735,916828-916983,917139-917368,917472-917511,
917603-917736,917830-917931,918726-918770,919129-919206,
919225-919365,919447-919542,919732-919833,920185-920283
Length = 679
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = -2
Query: 358 EGWLWKTGPRPTDAH--RRRWFTLDNRKLMYH-DEPLD 254
EGW+ + G R R R+F LDN+ L Y+ +P D
Sbjct: 21 EGWMLRYGRRKIGRSFVRTRYFVLDNKLLAYYKKQPKD 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,578,164
Number of Sequences: 37544
Number of extensions: 474111
Number of successful extensions: 1296
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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