Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_L04
(800 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023828-18|CAA19462.2| 742|Caenorhabditis elegans Hypothetical... 43 2e-04
AL023828-17|CAA19463.2| 826|Caenorhabditis elegans Hypothetical... 43 2e-04
AJ132699-1|CAA10735.1| 742|Caenorhabditis elegans centaurin bet... 43 2e-04
AJ132698-1|CAA10734.1| 826|Caenorhabditis elegans centaurin bet... 43 2e-04
L15314-3|AAF99986.2| 393|Caenorhabditis elegans Gtp exchange fa... 40 0.003
AJ236896-1|CAB38534.1| 377|Caenorhabditis elegans GRP1 protein ... 40 0.003
Z83114-1|CAB63234.1| 549|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z78198-7|CAB01573.1| 622|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z22179-1|CAA80169.1| 254|Caenorhabditis elegans Hypothetical pr... 28 8.9
>AL023828-18|CAA19462.2| 742|Caenorhabditis elegans Hypothetical
protein Y17G7B.15b protein.
Length = 742
Score = 43.2 bits (97), Expect = 2e-04
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 4/127 (3%)
Frame = -2
Query: 370 DFAREGWLWKTGPRPTDAHRRRWFTLDNRKLMYHDEPLDAYPKGEIFVGNESNGYCIRVS 191
D EG+L+K RRWF + +++L+Y D P + E+ C+
Sbjct: 191 DVMMEGYLYKRSSNAFKTWNRRWFQIKDKQLLYSHRSTDLEP---ATIMEENLRICLVRP 247
Query: 190 NTGN----GCKEARFPFQLVTPERTYCLAATTHEDRDCWLAVLQQTIKRSLTPQDSTKVN 23
N GC F+LVTP R + L A + W+ LQ+TI +L DS V
Sbjct: 248 APSNIDRIGC------FELVTPTRIHLLQADSESLCQDWMRALQRTI-LALHEGDSVDVA 300
Query: 22 REKKKKK 2
+ K
Sbjct: 301 STSPRNK 307
>AL023828-17|CAA19463.2| 826|Caenorhabditis elegans Hypothetical
protein Y17G7B.15a protein.
Length = 826
Score = 43.2 bits (97), Expect = 2e-04
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 4/127 (3%)
Frame = -2
Query: 370 DFAREGWLWKTGPRPTDAHRRRWFTLDNRKLMYHDEPLDAYPKGEIFVGNESNGYCIRVS 191
D EG+L+K RRWF + +++L+Y D P + E+ C+
Sbjct: 275 DVMMEGYLYKRSSNAFKTWNRRWFQIKDKQLLYSHRSTDLEP---ATIMEENLRICLVRP 331
Query: 190 NTGN----GCKEARFPFQLVTPERTYCLAATTHEDRDCWLAVLQQTIKRSLTPQDSTKVN 23
N GC F+LVTP R + L A + W+ LQ+TI +L DS V
Sbjct: 332 APSNIDRIGC------FELVTPTRIHLLQADSESLCQDWMRALQRTI-LALHEGDSVDVA 384
Query: 22 REKKKKK 2
+ K
Sbjct: 385 STSPRNK 391
>AJ132699-1|CAA10735.1| 742|Caenorhabditis elegans centaurin beta
1B protein.
Length = 742
Score = 43.2 bits (97), Expect = 2e-04
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 4/127 (3%)
Frame = -2
Query: 370 DFAREGWLWKTGPRPTDAHRRRWFTLDNRKLMYHDEPLDAYPKGEIFVGNESNGYCIRVS 191
D EG+L+K RRWF + +++L+Y D P + E+ C+
Sbjct: 191 DVMMEGYLYKRSSNAFKTWNRRWFQIKDKQLLYSHRSTDLEP---ATIMEENLRICLVRP 247
Query: 190 NTGN----GCKEARFPFQLVTPERTYCLAATTHEDRDCWLAVLQQTIKRSLTPQDSTKVN 23
N GC F+LVTP R + L A + W+ LQ+TI +L DS V
Sbjct: 248 APSNIDRIGC------FELVTPTRIHLLQADSESLCQDWMRALQRTI-LALHEGDSVDVA 300
Query: 22 REKKKKK 2
+ K
Sbjct: 301 STSPRNK 307
>AJ132698-1|CAA10734.1| 826|Caenorhabditis elegans centaurin beta
1A protein.
Length = 826
Score = 43.2 bits (97), Expect = 2e-04
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 4/127 (3%)
Frame = -2
Query: 370 DFAREGWLWKTGPRPTDAHRRRWFTLDNRKLMYHDEPLDAYPKGEIFVGNESNGYCIRVS 191
D EG+L+K RRWF + +++L+Y D P + E+ C+
Sbjct: 275 DVMMEGYLYKRSSNAFKTWNRRWFQIKDKQLLYSHRSTDLEP---ATIMEENLRICLVRP 331
Query: 190 NTGN----GCKEARFPFQLVTPERTYCLAATTHEDRDCWLAVLQQTIKRSLTPQDSTKVN 23
N GC F+LVTP R + L A + W+ LQ+TI +L DS V
Sbjct: 332 APSNIDRIGC------FELVTPTRIHLLQADSESLCQDWMRALQRTI-LALHEGDSVDVA 384
Query: 22 REKKKKK 2
+ K
Sbjct: 385 STSPRNK 391
>L15314-3|AAF99986.2| 393|Caenorhabditis elegans Gtp exchange
factor for arfs protein1 protein.
Length = 393
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = -2
Query: 361 REGWLWKTGPRPTDAH----RRRWFTLDNRKLMYHDEPLDAYPKGEIFVGN 221
REGWL+K P + ++RWF L L Y D+ D PKG I + N
Sbjct: 264 REGWLFKQSSNPLFSGALSWKKRWFVLSENCLYYFDQMTDKEPKGIITLAN 314
>AJ236896-1|CAB38534.1| 377|Caenorhabditis elegans GRP1 protein
protein.
Length = 377
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = -2
Query: 361 REGWLWKTGPRPTDAH----RRRWFTLDNRKLMYHDEPLDAYPKGEIFVGN 221
REGWL+K P + ++RWF L L Y D+ D PKG I + N
Sbjct: 248 REGWLFKQSSNPLFSGALSWKKRWFVLSENCLYYFDQMTDKEPKGIITLAN 298
>Z83114-1|CAB63234.1| 549|Caenorhabditis elegans Hypothetical
protein K09B11.2 protein.
Length = 549
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +1
Query: 586 NSDNLRTPFGSLVLSNVILERVFGFTEYEFSELVSAVLLPRFIRKPCMLPDNMTDVRDDR 765
N + + G+ S I ++ F E S +VS L+ I+K +LP + RDD
Sbjct: 97 NYEKIMEMIGTTEPSVFIFSKILDFAEETVSGVVSNFLIHSSIQKQIILPPHFFISRDDF 156
Query: 766 IL 771
I+
Sbjct: 157 II 158
>Z78198-7|CAB01573.1| 622|Caenorhabditis elegans Hypothetical
protein F55C5.8 protein.
Length = 622
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 650 TRSSITLERTKEPKGVLKLSELNVAFAPPKIGHMNSMQLTFMKDG 516
T SSI R +E + L+L E N+A +P +G M + M+ G
Sbjct: 199 TLSSIFKGRCREIQPQLRLCEFNIAESPGAVGTMTELMELRMQMG 243
>Z22179-1|CAA80169.1| 254|Caenorhabditis elegans Hypothetical
protein F58A4.1 protein.
Length = 254
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -1
Query: 695 TADTNSENSYSVKPKTRSSITLERTKEPKGVLKLSELNVAFAPPKI 558
T+ + S ++ +V P TRSS T T P K + + P+I
Sbjct: 109 TSTSTSRSTSTVTPTTRSSTTTTATSTPTSSSKATTTSAQITQPEI 154
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,073,339
Number of Sequences: 27780
Number of extensions: 389289
Number of successful extensions: 1072
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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