Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_L04
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.3  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    23   3.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.6  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 710 KRGKRTADTNSENSYSVKPKTRSSITLERTK 618
           K  +RT  T  EN  S+K    + + L+ TK
Sbjct: 378 KCDRRTGKTTEENPKSIKSGDAAIVMLQPTK 408


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 710 KRGKRTADTNSENSYSVKPKTRSSITLERTK 618
           K  +RT  T  EN  S+K    + + L+ TK
Sbjct: 89  KCDRRTGKTTEENPKSIKSGDAAIVMLQPTK 119


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 771 KNSVIPNVSHIVGKHAGLPYETGQEDSRYQLRKFILSETED 649
           +NS++PN     GKH G   +    ++  +L   I +E ED
Sbjct: 398 QNSLLPNFVGYKGKHIGKSGKVDVINAAKELIFQIANELED 438


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 303  GSPSIIGNSCTTTSRLMLIPRARFLSVTNQTAT 205
            G PS + N+ T  S+ ++   ARF+ V   + T
Sbjct: 1446 GDPSDMLNTRTKGSKPIIPEAARFIEVATNSIT 1478


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 409 STPESDLIHRLPRDFAREGWLWKT 338
           STP  +L H L +D  +E W  +T
Sbjct: 169 STPIGNLSHALLKDPVKEFWERRT 192


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 409 STPESDLIHRLPRDFAREGWLWKT 338
           STP  +L H L +D  +E W  +T
Sbjct: 222 STPIGNLSHALLKDPVKEFWERRT 245


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,672
Number of Sequences: 438
Number of extensions: 4709
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)