Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_L04
(800 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g29700.1 68415.m03610 pleckstrin homology (PH) domain-contain... 42 4e-04
At5g05710.1 68418.m00628 pleckstrin homology (PH) domain-contain... 34 0.096
At3g59430.2 68416.m06629 expressed protein 30 2.1
At3g59430.1 68416.m06628 expressed protein 30 2.1
At2g16970.1 68415.m01955 expressed protein ; expression support... 29 2.7
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 29 3.6
At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger) fa... 29 3.6
At5g07590.1 68418.m00870 WD-40 repeat protein family contains 3 ... 29 4.7
At3g15030.2 68416.m01902 TCP family transcription factor, putati... 28 8.3
At3g15030.1 68416.m01901 TCP family transcription factor, putati... 28 8.3
At2g24930.1 68415.m02981 Ulp1 protease family protein contains P... 28 8.3
>At2g29700.1 68415.m03610 pleckstrin homology (PH) domain-containing
protein (PH1) identical to AtPH1 [Arabidopsis thaliana]
GI:5926716; contains Pfam profile PF00169: PH domain
Length = 145
Score = 42.3 bits (95), Expect = 4e-04
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Frame = -2
Query: 361 REGWLWKTGPRPTDAHRRRWFTLDNRKLMYHDEPLDAYPKGEIFVGNESNGYCIRVSNTG 182
R GWL K G RRRWF L KL++ + A +G G S G C+ V
Sbjct: 29 RSGWLTKQGDY-IKTWRRRWFVLKRGKLLWFKDQAAAGIRGSTPRGVISVGDCLTVKGAE 87
Query: 181 NGCKEARFPFQLVTPERTYCLAATTHEDRDCWL-AVLQQTIKRSLTPQDSTKVNREKKK 8
+ + F F+L + T A ++++ W+ ++ + ++ S + DS ++ + ++
Sbjct: 88 DVVNKP-FAFELSSGSYTMFFIADNEKEKEEWINSIGRSIVQHSRSVTDSEVLDYDHRR 145
>At5g05710.1 68418.m00628 pleckstrin homology (PH) domain-containing
protein similar to AtPH1 [Arabidopsis thaliana]
GI:5926716; contains Pfam profile PF00169: PH domain
Length = 144
Score = 34.3 bits (75), Expect = 0.096
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Frame = -2
Query: 361 REGWLWKTGPRPTDAHRRRWFTLDNRKLM-YHDEPLDAYPKGEIFVGNESNGYCIRVSNT 185
R GWL K G RRRWF L KL + D + + V ES C+
Sbjct: 30 RTGWLTKQGEY-IKTWRRRWFVLKQGKLFWFKDSDVTRVSRPRGVVPVES---CLTAKGA 85
Query: 184 GNGCKEARFPFQLVTPERTYCLAATTHEDRDCWL-AVLQQTIKRSLTPQDSTKVNREKK 11
+ + F+L T T A + ++++ W+ ++ + ++ S + DS V+ + K
Sbjct: 86 EDVLNKQN-AFELSTRNETMYFIADSEKEKEDWINSIGRSIVQNSRSVTDSEIVDYDNK 143
>At3g59430.2 68416.m06629 expressed protein
Length = 451
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -2
Query: 343 KTGPRPTDAHRRRWFTLDNRKLMYHDEPLDAYPKGEIFVGNESNGYCIRVSNTGNGCKE 167
K+ + TD H RR +L P D +P GE + + + C R+ + + CKE
Sbjct: 224 KSSGQDTDGHVRRESSLSPPMKDNAHLPSDHHPNGERSLASSAIEPCNRIKESSDTCKE 282
>At3g59430.1 68416.m06628 expressed protein
Length = 451
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -2
Query: 343 KTGPRPTDAHRRRWFTLDNRKLMYHDEPLDAYPKGEIFVGNESNGYCIRVSNTGNGCKE 167
K+ + TD H RR +L P D +P GE + + + C R+ + + CKE
Sbjct: 224 KSSGQDTDGHVRRESSLSPPMKDNAHLPSDHHPNGERSLASSAIEPCNRIKESSDTCKE 282
>At2g16970.1 68415.m01955 expressed protein ; expression supported
by MPSS
Length = 414
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/67 (26%), Positives = 35/67 (52%)
Frame = +1
Query: 598 LRTPFGSLVLSNVILERVFGFTEYEFSELVSAVLLPRFIRKPCMLPDNMTDVRDDRILRA 777
L T + SL L+ FGF + +F+EL+ V + I + +LP ++ + + R+L
Sbjct: 225 LNTKYSSLK-DMYFLKARFGFNKNDFAELILLVTIIGSISQLFILPKLVSAIGERRVLST 283
Query: 778 HIXLGSI 798
+ + S+
Sbjct: 284 GLLMDSV 290
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/75 (26%), Positives = 35/75 (46%)
Frame = -2
Query: 226 GNESNGYCIRVSNTGNGCKEARFPFQLVTPERTYCLAATTHEDRDCWLAVLQQTIKRSLT 47
G ES C R + +G+ +E Q+ +R + T+H+ R ++ + T
Sbjct: 351 GRESQTLCYRCNGSGHFARECPNSSQVSKRDRE--TSTTSHKSRK----KNKENSEHDST 404
Query: 46 PQDSTKVNREKKKKK 2
P +S ++KKKKK
Sbjct: 405 PHESNGKTKKKKKKK 419
>At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q06003 Goliath
protein (G1 protein) {Drosophila melanogaster}; contains
Pfam profile PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 381
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -3
Query: 684 QLRKFILSETEDTLKYHVREDQGTEGRSQIVRVEC 580
QL KF + DT+K+ V E+QG +G S V EC
Sbjct: 275 QLTKFKFRKVGDTMKHTVDEEQG-QGDSGGVMTEC 308
>At5g07590.1 68418.m00870 WD-40 repeat protein family contains 3
WD-40 repeats (PF00400); similarity to WD-repeat protein
8 (WDR8)(SP:Q9P2S5] [HOMO SAPIENS]
Length = 458
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 508 LVVPSFMNVNCIEFMWPIFGGAKATFNSD 594
L V S +N C+ WP G +FN D
Sbjct: 115 LTVWSLLNTACVHVQWPKHGSKGVSFNQD 143
>At3g15030.2 68416.m01902 TCP family transcription factor, putative
similar to TCP3 GB:AAC24010 [Arabidopsis thaliana]
Length = 420
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = -2
Query: 772 EEFCHPERQSYCREACRASL*NGARGQQIPTQKIH----TQ*NRRHAQVSR*RGPRNRR 608
++F HP S R + +G G+ + Q H T RH++V +GPR+RR
Sbjct: 4 DQFHHPPPPSSMRHRSTSDAADGGCGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRR 62
>At3g15030.1 68416.m01901 TCP family transcription factor, putative
similar to TCP3 GB:AAC24010 [Arabidopsis thaliana]
Length = 420
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = -2
Query: 772 EEFCHPERQSYCREACRASL*NGARGQQIPTQKIH----TQ*NRRHAQVSR*RGPRNRR 608
++F HP S R + +G G+ + Q H T RH++V +GPR+RR
Sbjct: 4 DQFHHPPPPSSMRHRSTSDAADGGCGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRR 62
>At2g24930.1 68415.m02981 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 926
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 328 PTDAHRRRWFTLDNRKLMYHDEPLDAYPKG 239
PT+ +RRW ++ K ++ DE + YP G
Sbjct: 157 PTE--KRRWIPFESAKRVFDDEAMKTYPWG 184
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,039,209
Number of Sequences: 28952
Number of extensions: 363115
Number of successful extensions: 1005
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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