Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_L02
(872 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 34 0.030
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 2.6
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 27 3.5
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 4.6
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 26 6.1
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 26 6.1
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 26 6.1
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 26 6.1
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 8.1
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.9 bits (74), Expect = 0.030
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = -2
Query: 835 SPLCIKPPFPCDXGYINPDHQIPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEA 656
+P I PP P +P + P+ H P+ P +S +P P + P + P LSS+A
Sbjct: 965 APPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLAR--VPPV-PKLSSKA 1021
Query: 655 PSAYLTPSS 629
P L PS+
Sbjct: 1022 PPVPL-PSA 1029
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.5 bits (58), Expect = 2.6
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = -2
Query: 784 PDHQ-IPRFHTPTTPDLTSISINPLTP-Y*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKG 611
P HQ FHTPT P T +S +P + + PLS +A S LT S L +
Sbjct: 131 PKHQEFHLFHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAAS--LTSSPLKDFQS 188
Query: 610 VSPPYFQVNDESQA 569
SPP V +S +
Sbjct: 189 -SPPLSTVLQKSHS 201
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -3
Query: 438 LVTHKELALKVSSIIGTRVYVLDPSCY 358
+V H E LKV II T Y LD S Y
Sbjct: 37 VVKHHEEFLKVCDIISTFTYQLDASIY 63
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -3
Query: 363 CYFSTPPFDTILYDNIRTVLKDNKTALLSASI 268
CY P + + L ++I+T+L DN ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -1
Query: 842 GGLALMHQATLPLRXRXHQPRSSNPPIPYTNHPRLNIH 729
G + +H AT P R RSS+ P T P + H
Sbjct: 340 GHMRSLHNATSPFRPFSPSYRSSDTHSPRTRSPNVQTH 377
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 26.2 bits (55), Expect = 6.1
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -2
Query: 814 PFPCDXGYINPDHQ-IPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 638
PF +N DH P +P + + S+NP TP +P + PP+S+ +P
Sbjct: 243 PFATRRPSLNTDHHGRPILLSPL--NYQNSSLNPSTPSPFGGSPVMHPPVSNLSPRTPAV 300
Query: 637 PSS 629
P S
Sbjct: 301 PMS 303
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 573 KLRALLVVIPRILRSPPPTHPLIEDV 496
KLR++L I ++LR P P PL+ +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 26.2 bits (55), Expect = 6.1
Identities = 21/76 (27%), Positives = 31/76 (40%)
Frame = -2
Query: 832 PLCIKPPFPCDXGYINPDHQIPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP 653
PL + P+ G P +F + S++ +PL +P L P SS +P
Sbjct: 289 PLHSQQPYVDTPGIDAPSDLEAKFSDLGVSSVVSVT-SPLQSCTNSPSPPLSSPASSASP 347
Query: 652 SAYLTPSSLGMXKGVS 605
S L SLG+ S
Sbjct: 348 SESLRNESLGIKSAKS 363
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 578 ITSFAPY*SSFHAYSAPPLQLTPSSKTSS 492
+ SF PY S F A P L ++PS+ +S
Sbjct: 302 LQSFHPYESLFSAGQPPSLPISPSTSQNS 330
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,239
Number of Sequences: 5004
Number of extensions: 49837
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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