Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_L02
         (872 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1790 - 39888313-39888350,39888437-39888530,39888612-398888...    28   8.5  

>01_06_1790 -
           39888313-39888350,39888437-39888530,39888612-39888836,
           39888944-39889018,39889144-39889212,39889319-39889384,
           39889492-39889713,39889794-39890681,39890973-39891053,
           39892546-39892598,39893010-39893088,39893218-39893319
          Length = 663

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 827 MHQATLPLRXRXHQPRSSNPPIPYTNHPR 741
           MHQ+  PL+       +S  P+PY N P+
Sbjct: 546 MHQSCSPLQSSHFPLETSGAPLPYINQPQ 574


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,086,986
Number of Sequences: 37544
Number of extensions: 409424
Number of successful extensions: 1164
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)