Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_L02
         (872 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023493-2|CAD44137.1|  909|Caenorhabditis elegans Hypothetical ...    28   7.6  
AL023493-1|CAA18898.1|  947|Caenorhabditis elegans Hypothetical ...    28   7.6  
AF100656-3|AAF99968.1|  265|Caenorhabditis elegans Hypothetical ...    28   7.6  

>AL023493-2|CAD44137.1|  909|Caenorhabditis elegans Hypothetical
           protein H20J18.1b protein.
          Length = 909

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -1

Query: 824 HQATLPLRXRXHQPRSSNPPIPYTNHPRLNIHFHQSPDAVLE 699
           HQ   P+R   H P   N  IP    P++     +SP   LE
Sbjct: 853 HQIPSPMRQGAHNPLGINRSIPDAAPPKIEADSSRSPSEDLE 894


>AL023493-1|CAA18898.1|  947|Caenorhabditis elegans Hypothetical
            protein H20J18.1a protein.
          Length = 947

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -1

Query: 824  HQATLPLRXRXHQPRSSNPPIPYTNHPRLNIHFHQSPDAVLE 699
            HQ   P+R   H P   N  IP    P++     +SP   LE
Sbjct: 891  HQIPSPMRQGAHNPLGINRSIPDAAPPKIEADSSRSPSEDLE 932


>AF100656-3|AAF99968.1|  265|Caenorhabditis elegans Hypothetical
           protein F49F1.1 protein.
          Length = 265

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -2

Query: 772 IPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPS 650
           +P   T  TP+LT++++ P+T   K     + P  +++ P+
Sbjct: 173 VPLVLTTLTPELTTVTVEPITSTLKPTTTTITPTTTTKLPT 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,124,619
Number of Sequences: 27780
Number of extensions: 292850
Number of successful extensions: 825
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)