Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_L02
(872 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g24980.1 68415.m02987 proline-rich extensin-like family prote... 34 0.14
At3g47170.1 68416.m05122 transferase family protein low similari... 33 0.19
At5g06630.1 68418.m00749 proline-rich extensin-like family prote... 31 0.76
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 29 3.1
At2g42460.1 68415.m05253 meprin and TRAF homology domain-contain... 29 3.1
At4g27850.1 68417.m03999 proline-rich family protein contains pr... 29 5.4
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 29 5.4
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 29 5.4
At1g73200.1 68414.m08471 expressed protein 28 7.1
At3g24550.1 68416.m03083 protein kinase family protein contains ... 28 9.4
At1g06170.2 68414.m00649 basic helix-loop-helix (bHLH) family pr... 28 9.4
At1g06170.1 68414.m00648 basic helix-loop-helix (bHLH) family pr... 28 9.4
>At2g24980.1 68415.m02987 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 559
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = -2
Query: 763 FHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPY 596
+ +P TP S S P ++AP KP + S P Y TPS K PPY
Sbjct: 25 YSSPQTPSYNSPSYEHKGP---KYAPHPKPYVKSSPPPQYYTPSPKVNYKSPPPPY 77
>At3g47170.1 68416.m05122 transferase family protein low similarity
to 10-deacetylbaccatin III-10-O-acetyl transferase Taxus
cuspidata GI:6746554; contains Pfam profile PF02458
transferase family
Length = 468
Score = 33.5 bits (73), Expect = 0.19
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = -3
Query: 579 NHKLRALLVVIPRILRSPP-PTHPLIEDVVMATNQAIIDYK-VKIADNNLVTHKELALKV 406
N K LV + + SP PT ++ +++ T++ I K + I D NL KE +K+
Sbjct: 222 NDKNNPKLVDVEKDCSSPDTPTEDMVREILNITSEDITKLKNIIIEDENLTNEKEKNMKI 281
Query: 405 SSIIGTRVYVLDPSC 361
+++ YV C
Sbjct: 282 TTVEVLAAYVWRARC 296
>At5g06630.1 68418.m00749 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 440
Score = 31.5 bits (68), Expect = 0.76
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = -2
Query: 763 FHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPY 596
+ +P TP S S P ++AP KP + S P Y TPS K PPY
Sbjct: 31 YSSPHTPAYDSPSYEHKGP---KYAPHPKPYVYSSPPPPYYTPSPKVNYKSPPPPY 83
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 29.5 bits (63), Expect = 3.1
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Frame = -2
Query: 814 PFPCDXGYINPDHQIPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAY--- 644
P P ++P P P+ PD+T P P + P P P
Sbjct: 173 PMPSPPPPVSPPPPTPTPSVPSPPDVTPTPPTPSVPSPPDVTPTPPTPSVPSPPDVTPTP 232
Query: 643 LTPSSLGMXKGVSPPYF-QVNDESQAS 566
TP S+ G SPPY +DE +A+
Sbjct: 233 PTPPSVPTPSG-SPPYVPPPSDEEEAA 258
>At2g42460.1 68415.m05253 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 441
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 552 VIPRILRSPPPTHPLIEDVVMATNQAIIDYKVKIADNNLVTHKEL 418
V P++L PL E+ + N+ II +VK+A+ +T KE+
Sbjct: 273 VEPKMLSFKDYASPLQEEGFLENNKLIIRVEVKVAEEGYLTGKEM 317
>At4g27850.1 68417.m03999 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 577
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Frame = -2
Query: 835 SPLCIKPPFPCDXGYINPDHQIPRFHTPTTPDLTSISINPLT---PY*KEFAPGLKPPLS 665
SPL + P P PD +P P +P T +PL P +PG PPL
Sbjct: 225 SPLPLPGPPPSSSPTPGPDSPLPSPGPPPSPSPTPGPDSPLPSPGPDSPLPSPGPDPPLP 284
Query: 664 SEAPSAY 644
S P Y
Sbjct: 285 SPGPHLY 291
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 28.7 bits (61), Expect = 5.4
Identities = 23/65 (35%), Positives = 25/65 (38%)
Frame = -2
Query: 826 CIKPPFPCDXGYINPDHQIPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSA 647
C PP+ D P H P HTP TP S + P TP P P PS
Sbjct: 58 CGSPPY--DPSPSTPSHPSPPSHTP-TPSTPSHTPTPHTPS-HTPTPHTPPCNCGSPPSH 113
Query: 646 YLTPS 632
TPS
Sbjct: 114 PSTPS 118
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 28.7 bits (61), Expect = 5.4
Identities = 23/65 (35%), Positives = 25/65 (38%)
Frame = -2
Query: 826 CIKPPFPCDXGYINPDHQIPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSA 647
C PP+ D P H P HTP TP S + P TP P P PS
Sbjct: 58 CGSPPY--DPSPSTPSHPSPPSHTP-TPSTPSHTPTPHTPS-HTPTPHTPPCNCGSPPSH 113
Query: 646 YLTPS 632
TPS
Sbjct: 114 PSTPS 118
>At1g73200.1 68414.m08471 expressed protein
Length = 779
Score = 28.3 bits (60), Expect = 7.1
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -2
Query: 100 DVRELQGAAATRGDRTRGPSGTRTQAEXGXK 8
D ++++ + D ++GP GT+T + G K
Sbjct: 473 DAQDVKSGGTDKADESKGPKGTKTGSSNGSK 503
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = -2
Query: 754 PTTPDLTSISINPLTPY*KEFAP-----GLKPPLSSEAPSAYLTPS 632
P +P S S P +P P L PPL +PSA +TPS
Sbjct: 44 PPSPSTNSTSPPPSSPLPPSLPPPSPPGSLTPPLPQPSPSAPITPS 89
>At1g06170.2 68414.m00649 basic helix-loop-helix (bHLH) family
protein contains Pfam profile:PF00010 helix-loop-helix
DNA-binding domain
Length = 420
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = -3
Query: 657 LHQRISPPRHWA----WXKGFRPLIFK*MMNHKLRALLVVIPRILRSPPP-THPLIEDVV 493
+HQ + P + W G++ + NH LL ++ S PP +P I+D++
Sbjct: 91 MHQTLQDPSYAQQSNHWDNGYQDFV-NLGPNHTTPDLLSLLQLPRSSLPPFANPSIQDII 149
Query: 492 MATNQAIIDY 463
M T+ ++ Y
Sbjct: 150 MTTSSSVAAY 159
>At1g06170.1 68414.m00648 basic helix-loop-helix (bHLH) family
protein contains Pfam profile:PF00010 helix-loop-helix
DNA-binding domain
Length = 420
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = -3
Query: 657 LHQRISPPRHWA----WXKGFRPLIFK*MMNHKLRALLVVIPRILRSPPP-THPLIEDVV 493
+HQ + P + W G++ + NH LL ++ S PP +P I+D++
Sbjct: 91 MHQTLQDPSYAQQSNHWDNGYQDFV-NLGPNHTTPDLLSLLQLPRSSLPPFANPSIQDII 149
Query: 492 MATNQAIIDY 463
M T+ ++ Y
Sbjct: 150 MTTSSSVAAY 159
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,776,225
Number of Sequences: 28952
Number of extensions: 297445
Number of successful extensions: 999
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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