Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_L01
(810 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 178 2e-43
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 172 8e-42
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 142 1e-32
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 130 3e-29
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 126 5e-28
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 97 5e-19
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 93 6e-18
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 88 2e-16
UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S riboso... 85 2e-15
UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: ... 77 7e-13
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 65 2e-09
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 62 2e-08
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 60 9e-08
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 57 6e-07
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 56 1e-06
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 55 2e-06
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 54 6e-06
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 53 1e-05
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 52 2e-05
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 50 5e-05
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 50 7e-05
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 47 6e-04
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 44 0.003
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 38 0.30
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 37 0.52
UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-... 36 1.6
UniRef50_Q8IKJ3 Cluster: Putative uncharacterized protein; n=1; ... 35 2.1
UniRef50_Q2BFU2 Cluster: RTX toxins and related Ca2+-binding pro... 35 2.8
UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1; ... 33 6.4
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 178 bits (433), Expect = 2e-43
Identities = 85/160 (53%), Positives = 108/160 (67%), Gaps = 1/160 (0%)
Frame = -3
Query: 745 IQXXGGPSRTKXM-GQRTSGEPIPVDSVLPKMK*LTALVSPRAKDTKVSLXVGTQRSYPV 569
IQ GG K Q + +PV SV + + + + + + K + P
Sbjct: 183 IQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPR 242
Query: 568 RHXKGLRKVACIGAWHPSRVSFXVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 389
+ KGLRKVACIGAWHP+RV +ARAGQKGYHHRTE+NKKI+RIG+G H +DGK++KNN
Sbjct: 243 KTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLVKNN 302
Query: 388 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 269
AST YD++ KSITP+GGFPHYGEVNNDFVM +G + GT K
Sbjct: 303 ASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKK 342
Score = 91.9 bits (218), Expect = 2e-17
Identities = 44/66 (66%), Positives = 49/66 (74%)
Frame = -1
Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
KGC G KKR+ITLRKSL VH R A+E I LKFIDT+SKFGHGRFQT +K AFMG K
Sbjct: 334 KGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393
Query: 114 KDRIRE 97
K +E
Sbjct: 394 KHLEKE 399
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 172 bits (419), Expect = 8e-42
Identities = 88/160 (55%), Positives = 108/160 (67%), Gaps = 1/160 (0%)
Frame = -3
Query: 745 IQXXGGPSRTKXMGQRTSGEP-IPVDSVLPKMK*LTALVSPRAKDTKVSLXVGTQRSYPV 569
IQ GG K R E +PV+ V + + + + + K K + P
Sbjct: 183 IQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPR 242
Query: 568 RHXKGLRKVACIGAWHPSRVSFXVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 389
+ +GLRKVACIGAWHP+RV+F VARAGQKGYHHRTE+NKKIY+IGQG KDGK+IKNN
Sbjct: 243 KTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNN 302
Query: 388 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 269
AST+YDLS+KSI P+GGF HYGEV NDFVM +G + GT K
Sbjct: 303 ASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKK 342
Score = 106 bits (255), Expect = 6e-22
Identities = 50/67 (74%), Positives = 57/67 (85%)
Frame = -1
Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
KGC +G KKR++TLRKSL V TKR ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LK
Sbjct: 334 KGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393
Query: 114 KDRIREE 94
KDRI +E
Sbjct: 394 KDRIAKE 400
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 142 bits (343), Expect = 1e-32
Identities = 64/102 (62%), Positives = 80/102 (78%)
Frame = -3
Query: 583 RSYPVRHXKGLRKVACIGAWHPSRVSFXVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGK 404
+ P + KGLRKVACIGAWHPSRV+F VARAGQKG+HHRT +N KIYRIG+ ++G
Sbjct: 190 KKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG- 248
Query: 403 VIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
KNN STE+DL++K+ITPMGGFP YG VN D++M +G + G
Sbjct: 249 --KNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLG 288
Score = 96.3 bits (229), Expect = 8e-19
Identities = 46/66 (69%), Positives = 53/66 (80%)
Frame = -1
Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
+G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFMG LK
Sbjct: 283 RGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 342
Query: 114 KDRIRE 97
+D + E
Sbjct: 343 RDFLAE 348
Score = 37.9 bits (84), Expect = 0.30
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -2
Query: 665 VAQDEMIDCIXXXXXXXXXXXXXRWHTKKLPRKTXQG 555
+A +MID I RWHTKKLPRKT +G
Sbjct: 163 IAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKG 199
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 130 bits (315), Expect = 3e-29
Identities = 62/102 (60%), Positives = 76/102 (74%)
Frame = -3
Query: 595 VGTQRSYPVRHXKGLRKVACIGAWHPSRVSFXVARAGQKGYHHRTEMNKKIYRIGQGIHK 416
V QR+ P R +G K+ C+GAWHP+RV+F VA+ GQKGYHH + NKKI +IGQG
Sbjct: 214 VDIQRNCPERPIEGCPKL-CVGAWHPARVTFSVAQVGQKGYHHNGD-NKKICKIGQGYLI 271
Query: 415 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQG 290
KDGK+IKNNA TEY LS+KSI +GGF HYGEV NDF+ +G
Sbjct: 272 KDGKLIKNNAPTEYHLSDKSINLLGGFVHYGEVTNDFIRLKG 313
Score = 58.4 bits (135), Expect = 2e-07
Identities = 33/67 (49%), Positives = 42/67 (62%)
Frame = -1
Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
KGC + KK + T+ K L V T + AL+KI+ K DT+ K GHG FQT K AF+G LK
Sbjct: 312 KGCAVRTKKHL-TICKYLLVQTIQWALKKIDPKLNDTTYKVGHGCFQTTEGKRAFIGPLK 370
Query: 114 KDRIREE 94
K+ EE
Sbjct: 371 KECTAEE 377
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 126 bits (305), Expect = 5e-28
Identities = 58/99 (58%), Positives = 73/99 (73%)
Frame = -3
Query: 574 PVRHXKGLRKVACIGAWHPSRVSFXVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 395
P + +GLRKVACIGAWHPSRV + VARAGQ GYHHRT +NKKIY++G+ + +
Sbjct: 295 PRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTHLNKKIYQLGRAVSME-----P 349
Query: 394 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
N A+T YDL+ K+ITPMGGF YG V ND+VM +G + G
Sbjct: 350 NQATTAYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVAG 388
Score = 86.6 bits (205), Expect = 7e-16
Identities = 40/67 (59%), Positives = 48/67 (71%)
Frame = -1
Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
KG GP++R+ITLR+ + T R EKI LKFIDTSSK GHGRFQT +K+ + G LK
Sbjct: 383 KGSVAGPRRRVITLRRPMAPQTSRKLTEKITLKFIDTSSKIGHGRFQTKKEKSQWYGPLK 442
Query: 114 KDRIREE 94
KDRIR E
Sbjct: 443 KDRIRRE 449
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 97.1 bits (231), Expect = 5e-19
Identities = 55/155 (35%), Positives = 86/155 (55%)
Frame = -3
Query: 733 GGPSRTKXMGQRTSGEPIPVDSVLPKMK*LTALVSPRAKDTKVSLXVGTQRSYPVRHXKG 554
G P + + + I ++S+ + + A+ + TK + P + +G
Sbjct: 170 GSPKMKLEFWLKLNNKKIYINSIFHENDIIDAIGITKGHGTKGVVSRWGITRLPRKTHRG 229
Query: 553 LRKVACIGAWHPSRVSFXVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEY 374
LRKVACIG W PSRV++ ++RAGQKGYH RT NKKIY+IG +++ N+ S
Sbjct: 230 LRKVACIGPWTPSRVAWTISRAGQKGYHKRTLFNKKIYKIGS---EENFSYYSNSLS--- 283
Query: 373 DLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 269
D KS+ MGGF +G +NND+++ +G + G+ K
Sbjct: 284 DSIVKSVNCMGGFKKFGFINNDYLIIKGSMTGSSK 318
Score = 55.2 bits (127), Expect = 2e-06
Identities = 27/56 (48%), Positives = 36/56 (64%)
Frame = -1
Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFM 127
KG G KR I LRK+++ EKI LK++DTSSK GHGR+++ ADK + M
Sbjct: 310 KGSMTGSSKRPILLRKNIKNKISSVITEKIILKYVDTSSKRGHGRYESSADKFSKM 365
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 93.5 bits (222), Expect = 6e-18
Identities = 55/141 (39%), Positives = 80/141 (56%)
Frame = -3
Query: 691 GEPIPVDSVLPKMK*LTALVSPRAKDTKVSLXVGTQRSYPVRHXKGLRKVACIGAWHPSR 512
G+ + V VL + + L + + K T+ + + + KG RKV IG WHP+R
Sbjct: 204 GKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPAR 263
Query: 511 VSFXVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFP 332
V + V AGQ G+HHRTE+NK++ IG+ +GK +K + +TE + ITP GGFP
Sbjct: 264 VMWTVPMAGQMGFHHRTELNKRLIAIGE-----NGK-LKLDENTEIE-----ITPKGGFP 312
Query: 331 HYGEVNNDFVMXQGLLHGT*K 269
HYG V +DF+M G + G K
Sbjct: 313 HYGIVRSDFMMIAGSVPGAIK 333
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 88.2 bits (209), Expect = 2e-16
Identities = 60/158 (37%), Positives = 84/158 (53%)
Frame = -3
Query: 742 QXXGGPSRTKXMGQRTSGEPIPVDSVLPKMK*LTALVSPRAKDTKVSLXVGTQRSYPVRH 563
Q GP + + +PV+ + +++ L + + + K K + P +
Sbjct: 141 QVNRGPVAKLDWAHKKLEQQVPVNHIF-RVRRLFVIGTTKGKHYKGISSHWYTKKVPWKT 199
Query: 562 XKGLRKVACIGAWHPSRVSFXVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAS 383
+ + ACI W VA A QKG HH T +NKKIY+IGQG K+GK+IKNNAS
Sbjct: 200 HQEFHEAACI--WD----GLSVAWARQKGCHHCT-INKKIYKIGQGYLIKNGKIIKNNAS 252
Query: 382 TEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 269
T+Y KSI+P+GG H G+V NDFVM + L GT K
Sbjct: 253 TDY---TKSISPLGGCIHCGKVTNDFVMLKDCLVGTKK 287
Score = 81.0 bits (191), Expect = 3e-14
Identities = 36/62 (58%), Positives = 46/62 (74%)
Frame = -1
Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
K C +G KKR+++L KSL + TK+ L+K+N KFIDT+SKFGHG FQ +K FMG LK
Sbjct: 279 KDCLVGTKKRVLSLCKSLLMRTKQQTLQKVNFKFIDTTSKFGHGCFQIVGEKKGFMGPLK 338
Query: 114 KD 109
KD
Sbjct: 339 KD 340
>UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S ribosomal
protein L3 (L4); n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L3 (L4) - Macaca
mulatta
Length = 153
Score = 85.0 bits (201), Expect = 2e-15
Identities = 41/63 (65%), Positives = 50/63 (79%)
Frame = -1
Query: 282 MGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRI 103
+G KK+++TL KS V TK ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKD+
Sbjct: 88 VGTKKQVLTLCKSSLVQTKWRALEKIDLKFIDTTSKFGHGRFQTIGEKKAFMGPLKKDQT 147
Query: 102 REE 94
+E
Sbjct: 148 AKE 150
>UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep:
Ribosomal protein L3 - Mus musculus (Mouse)
Length = 67
Score = 76.6 bits (180), Expect = 7e-13
Identities = 33/47 (70%), Positives = 40/47 (85%)
Frame = -3
Query: 409 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 269
GK+IKNNAST+YDLS+KSI P+GGF HYGEV NDF+M +G + GT K
Sbjct: 1 GKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKK 47
Score = 46.8 bits (106), Expect = 6e-04
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = -1
Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEK 208
KGC +G KKR++TLRKSL V TKR ALEK
Sbjct: 39 KGCVVGTKKRVLTLRKSLLVQTKRRALEK 67
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 64.9 bits (151), Expect = 2e-09
Identities = 39/106 (36%), Positives = 56/106 (52%)
Frame = -3
Query: 595 VGTQRSYPVRHXKGLRKVACIGAWHPSRVSFXVARAGQKGYHHRTEMNKKIYRIGQGIHK 416
+ TQ+ R K R V +G W+P R+ + V + GQ GYH RTE NK+I ++G
Sbjct: 219 IATQKRKHARTGKK-RHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMG----- 272
Query: 415 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
D +E+ ITP GGF HYG + ND++M +G + G
Sbjct: 273 --------------DKAEE-ITPAGGFLHYGLIRNDYIMLKGSIPG 303
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 61.7 bits (143), Expect = 2e-08
Identities = 38/95 (40%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Frame = -3
Query: 559 KGL-RKVACIGAWHPSRVSFXVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAS 383
KG+ R V IG W P V + V GQ GYH RTE NK+I +IG NN
Sbjct: 226 KGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIG------------NNGD 273
Query: 382 TEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
ITP GGF HYG + N++V+ +G + G
Sbjct: 274 --------EITPKGGFLHYGVIRNNYVVLKGSVQG 300
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 59.7 bits (138), Expect = 9e-08
Identities = 39/97 (40%), Positives = 50/97 (51%)
Frame = -3
Query: 568 RHXKGLRKVACIGAWHPSRVSFXVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 389
R KG R + IG PSRV + V AGQ GYH RTE NK+I +IG+ DG
Sbjct: 231 RKQKG-RHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGE-----DG------ 278
Query: 388 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
+ +TP GGF +YG V D++M G + G
Sbjct: 279 ---------EEVTPRGGFVNYGVVRGDYIMIHGTVPG 306
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 56.8 bits (131), Expect = 6e-07
Identities = 32/91 (35%), Positives = 46/91 (50%)
Frame = -3
Query: 550 RKVACIGAWHPSRVSFXVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYD 371
R++ +G W+PSRV V + GQ GYH RTE+NK++ I G
Sbjct: 232 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP--------------- 276
Query: 370 LSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
TP GGFP+YGEV+ + + +G + G
Sbjct: 277 ------TPDGGFPNYGEVDGPYTLVKGSVPG 301
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 56.0 bits (129), Expect = 1e-06
Identities = 37/97 (38%), Positives = 49/97 (50%)
Frame = -3
Query: 568 RHXKGLRKVACIGAWHPSRVSFXVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 389
++ K R++ +G + V + +AGQ GYH RTE NK+I RI
Sbjct: 227 KNSKRRRQIGNMGDFGTGYVRKTIRQAGQTGYHQRTEYNKRILRI--------------- 271
Query: 388 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
A E E ITP GGF HYGEV N +++ QG L G
Sbjct: 272 AGEE----ESQITPAGGFLHYGEVKNHYMIIQGSLPG 304
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 54.8 bits (126), Expect = 2e-06
Identities = 33/97 (34%), Positives = 48/97 (49%)
Frame = -3
Query: 568 RHXKGLRKVACIGAWHPSRVSFXVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 389
++ K R++ +G + V + +AGQ GYH RTE+NK+I RI
Sbjct: 247 KNSKRRRQIGNMGDFGTGYVRKTIRQAGQMGYHKRTELNKRILRISNP------------ 294
Query: 388 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
E +TP GGF HYGEV N +++ +G L G
Sbjct: 295 -------GESDVTPAGGFLHYGEVTNPYMVLEGSLPG 324
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 53.6 bits (123), Expect = 6e-06
Identities = 33/100 (33%), Positives = 50/100 (50%)
Frame = -3
Query: 568 RHXKGLRKVACIGAWHPSRVSFXVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 389
+H KG ++ +G P+ + F GQ G+H RTE NK+I ++G D +
Sbjct: 222 KHRKGHSRIGSVGPQKPA-IMFYTPFPGQLGFHQRTEYNKRILKVG------DAE----- 269
Query: 388 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 269
S K I P GG+PHYG V + F++ +G + G K
Sbjct: 270 -------SLKEINPPGGWPHYGLVRSQFIIVEGSVPGAVK 302
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 52.8 bits (121), Expect = 1e-05
Identities = 30/95 (31%), Positives = 48/95 (50%)
Frame = -3
Query: 559 KGLRKVACIGAWHPSRVSFXVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAST 380
K +R++ +G P V + V RAGQ G+H R E NK+I +G G+
Sbjct: 224 KTVRELGSLGPISPQNVMYTVPRAGQMGFHQRIEYNKRIMAVGSA-----GE-------- 270
Query: 379 EYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT 275
+ +I P GG+ H+G V D+++ +G + GT
Sbjct: 271 -----DDAINPSGGYKHFGMVKGDYIVLKGSVPGT 300
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 51.6 bits (118), Expect = 2e-05
Identities = 25/53 (47%), Positives = 33/53 (62%)
Frame = -3
Query: 559 KGLRKVACIGAWHPSRVSFXVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKV 401
KG+RKV IG+ P R+ V GQ GYH RTE NK I +IG+ ++ + G V
Sbjct: 218 KGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLIIKIGEPLNVEGGWV 270
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 50.4 bits (115), Expect = 5e-05
Identities = 33/99 (33%), Positives = 46/99 (46%)
Frame = -3
Query: 574 PVRHXKGLRKVACIGAWHPSRVSFXVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 395
P ++ K R + +G WHP V V +AGQ GY RT N ++ + +G
Sbjct: 216 PRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKYSKG---------- 265
Query: 394 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
+A T I GGF HYG V ND+V+ G + G
Sbjct: 266 EDADT--------INVRGGFLHYGLVKNDYVLLFGSVPG 296
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 50.0 bits (114), Expect = 7e-05
Identities = 32/94 (34%), Positives = 48/94 (51%)
Frame = -3
Query: 559 KGLRKVACIGAWHPSRVSFXVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAST 380
K +R+V +G P V + V RAGQ G+H R E +K+I +G +T
Sbjct: 226 KTVREVGSLGPISPQSVMYTVPRAGQFGFHQRVEYDKRIMIMG---------------NT 270
Query: 379 EYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
+ D + I P GGF H+G V DF++ +G + G
Sbjct: 271 DDD--KLKINPDGGFKHFGLVKGDFIVLKGSVPG 302
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 46.8 bits (106), Expect = 6e-04
Identities = 37/101 (36%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = -3
Query: 568 RHXKGLRKVACIGAWHPSRVSFX-VARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKN 392
+H KG R+ IGA R +F +AGQ G+H RTE NK+I I +K
Sbjct: 231 KHRKGSRR---IGARSHGRSTFWETPQAGQTGFHRRTEYNKRILMIDDDGYK-------- 279
Query: 391 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 269
+TP GGF YG V + FVM G + GT K
Sbjct: 280 ------------VTPAGGFLRYGVVRSTFVMLSGSIPGTPK 308
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 44.4 bits (100), Expect = 0.003
Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Frame = -3
Query: 568 RHXKGLRKVACIGAWHPSR-VSFXVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKN 392
+H KG RK+ G PS + GQ G+H RTE NK+I +IG
Sbjct: 243 KHRKGSRKIGTRG---PSLGTPSYTPQPGQLGFHRRTEYNKRIIKIGD------------ 287
Query: 391 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 269
K I P GGF YG V N +V+ +G + G+ K
Sbjct: 288 --------EPKEINPAGGFVRYGIVRNTYVLLEGSILGSKK 320
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 37.9 bits (84), Expect = 0.30
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = -3
Query: 568 RHXKGLRKVACIGAWHPSRVSFX-VARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKN 392
+H KG RK IG+ P + + GQ G+H RTE NK+I +IG
Sbjct: 285 KHRKGSRK---IGSRSPGFGTMSETPQPGQMGFHRRTEYNKRIIKIG------------- 328
Query: 391 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
++ +TP GGF YG V ++M G + G
Sbjct: 329 -------INGWEVTPKGGFLGYGIVYGPYIMLHGSIIG 359
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 37.1 bits (82), Expect = 0.52
Identities = 29/97 (29%), Positives = 43/97 (44%)
Frame = -3
Query: 568 RHXKGLRKVACIGAWHPSRVSFXVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 389
+H KG R+V +W S+ V + GQ GYH RT+ NK++ I K
Sbjct: 248 KHRKGSRRVGA-RSWGKGTSSY-VPQPGQMGYHRRTDYNKRVLMISDDPSK--------- 296
Query: 388 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
I GG+ HYG V + +V+ +G + G
Sbjct: 297 -----------INVEGGWLHYGLVKSKYVVLKGSVFG 322
>UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-12
- Homo sapiens (Human)
Length = 103
Score = 35.5 bits (78), Expect = 1.6
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = -2
Query: 242 CVCIQRGLH*KRSTSNSLTPRPSSVMVDSRRRLTRLHSWVH 120
C C + G +R T +SLTP PS M SR R HSW H
Sbjct: 63 CWCRRSGGLWRRLTLSSLTPPPSLAMAASRPWRRRKHSWDH 103
>UniRef50_Q8IKJ3 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 93
Score = 35.1 bits (77), Expect = 2.1
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +1
Query: 1 FFFFFFALSNVYFHGLHLRLRSSRWGCGSRSFFA 102
FFFFFF + N YF+ L L ++ GCG FA
Sbjct: 19 FFFFFFVVYNDYFNEPELPLDENKKGCGQFKCFA 52
>UniRef50_Q2BFU2 Cluster: RTX toxins and related Ca2+-binding
protein; n=2; Bacillus sp. NRRL B-14911|Rep: RTX toxins
and related Ca2+-binding protein - Bacillus sp. NRRL
B-14911
Length = 1415
Score = 34.7 bits (76), Expect = 2.8
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 409 GKVIKNNASTEYD-LSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
G VI+ N D LS K++T MG EV NDF M ++HG
Sbjct: 299 GAVIEGNVKVSGDFLSLKNLTIMGDLEIAKEVENDFYMEDAIVHG 343
>UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 1482
Score = 33.5 bits (73), Expect = 6.4
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = +2
Query: 293 LXHHKVVVYFTIMGETSHRCNGFLRQIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVM 472
L H ++ YF + +SH +II + +++NNFA +F+ L D V+F+ +
Sbjct: 463 LFFHSLIQYFVYLNNSSHILINHKDKIIFIKHLLYNNFAQMFLKYL---CDNYVYFTPIN 519
Query: 473 ITFLTST 493
I + S+
Sbjct: 520 ILSIYSS 526
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 758,646,639
Number of Sequences: 1657284
Number of extensions: 15045294
Number of successful extensions: 34506
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 33416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34467
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69966202150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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